Browse Element(s) Details


OsAffx.22135.1.S1_x_at

Description gb:NM_188309.1
DB_XREF= gi:34903701
GEN=P0489A05.17
TID=OsAffx.22135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A05.17 (P0489A05.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g261291/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26090Os.10827.1.S1_x_at9/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26090Os.46055.2.S1_x_at6/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26100Os.10263.1.S1_at2/118+15738761..15740929hypothetical protein
LOC_Os08g26110OsAffx.17176.1.S1_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26110OsAffx.17176.2.S1_s_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26120Os.51235.1.S1_at10/118+15755439..15757017expressed protein
LOC_Os08g26129OsAffx.22135.1.S1_x_at1/118+15758365..15760030NA
LOC_Os08g26140NANA8+15770944..15772059hypothetical protein
LOC_Os08g26150OsAffx.28610.2.S1_x_at5/118+15778389..15778840hypothetical protein
LOC_Os08g26150OsAffx.28610.3.S1_at2/118+15778389..15778840hypothetical protein
LOC_Os08g26160NANA8+15782581..15783162retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22135.1.S1_x_at--191--3431Chr01:5622358..5622382 (25 bp)
CAGAGAAAGGCAGCGATCGATTCGA
NONE
OsAffx.22135.1.S1_x_at--30--1431Chr01:5622355..5622379 (25 bp)
AGAAAGGCAGCGATCGATTCGATCT
NONE
OsAffx.22135.1.S1_x_at--903--6571Chr01:5622340..5622364 (25 bp)
GATTCGATCTGGTCTCTGGTCAAAG
NONE
OsAffx.22135.1.S1_x_at--469--6411Chr01:5622335..5622359 (25 bp)
GATCTGGTCTCTGGTCAAAGAGATA
NONE
OsAffx.22135.1.S1_x_at--497--103912Chr12:4965772..4965792 (21 bp)
TTTTGATCAAATCCAATGAATCACA
NONE
OsAffx.22135.1.S1_x_at--885--2431Chr01:5616895..5616919 (25 bp)
AAAATGGCAACAAAGAGGATGGCGC
NONE
OsAffx.22135.1.S1_x_at--89--3791Chr01:5616657..5616681 (25 bp)
CTCGGCCGCCGCTCAAAGAGGAGAA
NONE
OsAffx.22135.1.S1_x_at--62--12910Chr12:4966134..4966161 (25 bp)
AGATCGAGAGGAGTGCGCGATAATA
NONE
OsAffx.22135.1.S1_x_at--396--1334Chr12:4966140..4966167 (25 bp)
AGAGGAGTGCGCGATAATATCTGAG
NONE
OsAffx.22135.1.S1_x_at--545--9756Chr12:4966157..4966178 (22 bp)
TAATATCTGAGTTGGTGGCGCGTTC
NONE
OsAffx.22135.1.S1_x_at--342--3116Chr12:4966158..4966178 (21 bp)
AATATCTGAGTTGGTGGCGCGTTCG
NONE
Target Sequence 
CAGAGAAAGGCAGCGATCGATTCGATCTGGTCTCTGGTCAAAGAGATAAGAGAGAAGGGTATTTTGATCAAATCCAATGA
ATCACAAATTCAAAAAAAAAATGGCAACAAAGAGGATGGCGCCGCCGGCCTCCCGGCCACCGTCCTCGCGAGCTCGGCCG
GCCGGCCGCCACGCCCGCCCGCCTGGCCGGCCGCCACGCCCACCCGCCCGGCCAACCGCCGCGCCAGGTCGCACGGCGGC
GGCCTGCCCGCCCGCCCGCTTGCCGCACCCAGACGGCCGGCCGCCGCCGCTCCCGTCGGGCGCCGCTGCTCCCGCCCGGC
CGTCGCAACCACTCGCTCGGCCGCCGCTCAAAGAGGAGAAGGGGAGGAACGGGAGGGGAAAGGGGAGAGGAAGGGGATGG
AGGGGGAGAGGAAGGGATGGAGGAGTAATGAGAGGGGAGGAGATCGAGAGGAGTGCGCGATAATATCTGAGTTGGTGGCG
CGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22135.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis