Browse Element(s) Details


OsAffx.28545.4.S1_s_at

Description tigr:9632.m03563
TID=OsAffx.28545.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2608011/11hypothetical protein
LOC_Os08g3282011/11hypothetical protein
LOC_Os04g3786011/11hypothetical protein
LOC_Os07g3054011/11hypothetical protein
LOC_Os04g1983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26040NANA8+15707523..15708224hypothetical protein
LOC_Os08g26050OsAffx.29364.1.S1_at4/118+15710563..15712311hypothetical protein
LOC_Os08g26060NANA8+15721499..15721927hypothetical protein
LOC_Os08g26070OsAffx.25936.1.S1_s_at9/118+15726563..15729601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26070OsAffx.25936.7.S1_s_at8/118+15726563..15729601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26070OsAffx.25936.2.S1_x_at4/118+15726563..15729601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26070OsAffx.25936.5.S1_x_at2/118+15726563..15729601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26080OsAffx.28545.4.S1_s_at11/118+15731913..15732937hypothetical protein
LOC_Os08g26090Os.10827.1.S1_x_at9/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26090Os.46055.2.S1_x_at6/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26100Os.10263.1.S1_at2/118+15738761..15740929hypothetical protein
LOC_Os08g26110OsAffx.17176.1.S1_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26110OsAffx.17176.2.S1_s_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26120Os.51235.1.S1_at10/118+15755439..15757017expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28545.4.S1_s_at--973--74344Chr12:24514640..24514870 (25 bp)
GTGGAGCCGTCACAGTAGTAATTGC
NONE
OsAffx.28545.4.S1_s_at--1047--80745Chr12:24514642..24514872 (25 bp)
GGAGCCGTCACAGTAGTAATTGCAC
NONE
OsAffx.28545.4.S1_s_at--773--58746Chr12:24514643..24514873 (25 bp)
GAGCCGTCACAGTAGTAATTGCACT
NONE
OsAffx.28545.4.S1_s_at--1002--16745Chr12:24514644..24514874 (25 bp)
AGCCGTCACAGTAGTAATTGCACTT
NONE
OsAffx.28545.4.S1_s_at--754--44950Chr12:24514602..24514875 (25 bp)
GCCGTCACAGTAGTAATTGCACTTC
NONE
OsAffx.28545.4.S1_s_at--796--70953Chr12:24514857..24514878 (22 bp)
GTCACAGTAGTAATTGCACTTCATT
NONE
OsAffx.28545.4.S1_s_at--287--33152Chr12:24514857..24514880 (24 bp)
CACAGTAGTAATTGCACTTCATTAT
NONE
OsAffx.28545.4.S1_s_at--75--34550Chr12:24514858..24514882 (25 bp)
CAGTAGTAATTGCACTTCATTATTA
NONE
OsAffx.28545.4.S1_s_at--268--70754Chr12:24514863..24514887 (25 bp)
GTAATTGCACTTCATTATTATACTA
NONE
OsAffx.28545.4.S1_s_at--334--738Chr12:24514866..24514890 (25 bp)
ATTGCACTTCATTATTATACTACTT
NONE
OsAffx.28545.4.S1_s_at--1094--50937Chr12:24514869..24514893 (25 bp)
GCACTTCATTATTATACTACTTTAA
NONE
Target Sequence 
GTGGAGCCGTCACAGTAGTAATTGCACTTCATTATTATACTACTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28545.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis