Browse Element(s) Details


OsAffx.29364.1.S1_at

Description tigr:9636.m02614
TID=OsAffx.29364.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g265209/11hypothetical protein
LOC_Os08g260504/11hypothetical protein
LOC_Os08g263604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29364.1.S1_at--129--10353Chr08:16017927..16017951 (25 bp)
TTTAGTACACCTCCTCCTCGGAACA
LOC_Os08g26520
OsAffx.29364.1.S1_at--734--9253Chr08:16017916..16017940 (25 bp)
TCCTCCTCGGAACAATGGTCAGGGT
LOC_Os08g26520
OsAffx.29364.1.S1_at--153--8173Chr08:16017908..16017932 (25 bp)
GGAACAATGGTCAGGGTGCTCACAG
LOC_Os08g26520
OsAffx.29364.1.S1_at--340--13Chr08:16017875..16017899 (25 bp)
ACCAAATCAAAACACTAGCGCCCAA
LOC_Os08g26520
OsAffx.29364.1.S1_at--322--6471Chr08:16016996..16017020 (25 bp)
GATAACAATGAAGTACCCAAACGTG
LOC_Os08g26520
OsAffx.29364.1.S1_at--271--6971Chr08:16016984..16017008 (25 bp)
GTACCCAAACGTGAGAATCCCTTGT
LOC_Os08g26520
OsAffx.29364.1.S1_at--681--3991Chr08:16016975..16016999 (25 bp)
CGTGAGAATCCCTTGTATGACATTG
LOC_Os08g26520
OsAffx.29364.1.S1_at--515--5671NONE
GACATTGAGTTAGTCACAGTCCGAT
NONE
OsAffx.29364.1.S1_at--571--6071NONE
GAGTTAGTCACAGTCCGATTTTCAT
NONE
OsAffx.29364.1.S1_at--306--4053Chr06:689004..689027 (24 bp)
CGATTTTCATCCCTTGATCGCAAAA
NONE
OsAffx.29364.1.S1_at--287--9312Chr06:24484783..24484802 (20 bp)
TCCCTTGATCGCAAAACCAGGATTA
NONE
Target Sequence 
TTTAGTACACCTCCTCCTCGGAACAATGGTCAGGGTGCTCACAGCCTCGNATACCAAATCAAAACACTAGCGCCCAAAGC
NAGTCAAATGGACTTCCTATTCCAGNNNNNNAANNNNNNNNANGATAACAATGAAGTACCCAAACGTGAGAATCCCTTGT
ATGACATTGAGTTAGTCACAGTCCGATTTTCATCCCTTGATCGCAAAACCAGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis