Browse Element(s) Details


OsAffx.17173.1.S1_at

Description tigr:9636.m02616
TID=OsAffx.17173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2654411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein
LOC_Os08g26580Os.51235.1.S1_at3/118+16045302..16046772hypothetical protein
LOC_Os08g26590OsAffx.29370.1.S1_at10/118+16048104..16048937hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_s_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.1.S1_at4/118+16050772..16051729hypothetical protein
LOC_Os08g26610NANA8+16052168..16054006retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17173.1.S1_at--427--9432Chr08:16025526..16025550 (25 bp)
TCGTGGTGCTCATGGTATCAGCGGT
LOC_Os08g26544
OsAffx.17173.1.S1_at--511--8613Chr08:16025523..16025547 (25 bp)
TGGTGCTCATGGTATCAGCGGTGAT
LOC_Os08g26544
OsAffx.17173.1.S1_at--465--10172Chr08:16025511..16025535 (25 bp)
TATCAGCGGTGATGGCAGGGCACAC
LOC_Os08g26544
OsAffx.17173.1.S1_at--272--8091Chr08:16025477..16025501 (25 bp)
GGAGCTGGCTGCCTACCTTAGCTTG
LOC_Os08g26544
OsAffx.17173.1.S1_at--61--8491Chr08:16025472..16025496 (25 bp)
TGGCTGCCTACCTTAGCTTGGCTAG
LOC_Os08g26544
OsAffx.17173.1.S1_at--930--3711Chr08:16025465..16025489 (25 bp)
CTACCTTAGCTTGGCTAGGCTGCAG
LOC_Os08g26544
OsAffx.17173.1.S1_at--759--10451Chr08:16025460..16025484 (25 bp)
TTAGCTTGGCTAGGCTGCAGCTCGG
LOC_Os08g26544
OsAffx.17173.1.S1_at--1150--9031Chr08:16025445..16025469 (25 bp)
TGCAGCTCGGCTGGTCCTTGGCTTG
LOC_Os08g26544
OsAffx.17173.1.S1_at--885--3891Chr08:16025419..16025443 (25 bp)
CTGGGCCATGCAGGCAAGTGGCTAT
LOC_Os08g26544
OsAffx.17173.1.S1_at--326--8231Chr08:16025407..16025431 (25 bp)
GGCAAGTGGCTATCTGGTCCAGATG
LOC_Os08g26544
OsAffx.17173.1.S1_at--192--192Chr08:16025305..16025329 (25 bp)
ATTTGAAGATGATAACTTTTCGAAG
LOC_Os08g26544
Target Sequence 
TCGTGGTGCTCATGGTATCAGCGGTGATGGCAGGGCACACGGGATGGAGGGAGCTGGCTGCCTACCTTAGCTTGGCTAGG
CTGCAGCTCGGCTGGTCCTTGGCTTGGCTGGGCCATGCAGGCAAGTGGCTATCTGGTCCAGATGGGAGGGTGTCAGGAGA
GGAATTTGAAGATGATAACTTTTCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis