Browse Element(s) Details


OsAffx.17176.2.S1_at

Description tigr:9636.m02622
TID=OsAffx.17176.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2660011/11hypothetical protein
LOC_Os08g261804/11Dirigent-like protein
LOC_Os08g265602/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein
LOC_Os08g26580Os.51235.1.S1_at3/118+16045302..16046772hypothetical protein
LOC_Os08g26590OsAffx.29370.1.S1_at10/118+16048104..16048937hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_s_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.1.S1_at4/118+16050772..16051729hypothetical protein
LOC_Os08g26610NANA8+16052168..16054006retrotransposon, putative, centromere-specific
LOC_Os08g26620Os.51235.1.S1_at3/118+16057841..16060718hypothetical protein
LOC_Os08g26630NANA8+16061953..16062153hypothetical protein
LOC_Os08g26650OsAffx.26046.1.S1_at1/118+16067612..16070377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26660OsAffx.22629.1.S1_at1/118+16071111..16073274retrotransposon protein, putative, unclassified
LOC_Os08g26660OsAffx.25917.1.S1_at1/118+16071111..16073274retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17176.2.S1_at--126--3832Chr08:16050814..16050838 (25 bp)
CTGCCAGCAGTCCTTGTTAGGCTAA
LOC_Os08g26600
OsAffx.17176.2.S1_at--793--4352Chr08:16050817..16050841 (25 bp)
CCAGCAGTCCTTGTTAGGCTAACAT
LOC_Os08g26600
OsAffx.17176.2.S1_at--1097--6771Chr08:16050829..16050853 (25 bp)
GTTAGGCTAACATACTTGGAGACAT
LOC_Os08g26600
OsAffx.17176.2.S1_at--82--4851Chr08:16050834..16050858 (25 bp)
GCTAACATACTTGGAGACATCTATC
LOC_Os08g26600
OsAffx.17176.2.S1_at--962--4271Chr08:16050921..16051038 (25 bp)
CCTGCTTTGCCAGGGTCCAATGCAA
LOC_Os08g26600
OsAffx.17176.2.S1_at--588--9071Chr08:16050923..16051040 (25 bp)
TGCTTTGCCAGGGTCCAATGCAAAT
LOC_Os08g26600
OsAffx.17176.2.S1_at--309--4411Chr08:16051024..16051046 (23 bp)
GCCAGGGTCCAATGCAAATGAAAAT
LOC_Os08g26600
OsAffx.17176.2.S1_at--143--7413Chr08:16051122..16051373 (25 bp)
GTGTTCAGCGATGGCAGGGTCCACA
LOC_Os08g26600
OsAffx.17176.2.S1_at--32--10533Chr08:16051125..16051376 (25 bp)
TTCAGCGATGGCAGGGTCCACAATT
LOC_Os08g26600
OsAffx.17176.2.S1_at--198--7431Chr08:16051380..16051404 (25 bp)
GTGTTTGGGCTCTTTGGTGTCAAGC
LOC_Os08g26600
OsAffx.17176.2.S1_at--936--10831Chr08:16051384..16051408 (25 bp)
TTGGGCTCTTTGGTGTCAAGCCCAA
LOC_Os08g26600
Target Sequence 
CTGCCAGCAGTCCTTGTTAGGCTAACATACTTGGAGACATCTATCCATGTCCATGCAAGTGTTCCCAGGAGAATGGGACT
AGCCTTCACATGCACTTGCACCAGTTCCCTGCTTTGCCAGGGTCCAATGCAAATGAAAATGTTGTTGGACGTCTACAAGG
CTTTCATCTCCAAGCTGGTCAAACCACCACCAGCTGGTACATGGCTCACACCATGGTGTTCAGCGATGGCAGGGTCCACA
ATTGAGGTGTTTGGGCTCTTTGGTGTCAAGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17176.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis