Browse Element(s) Details


OsAffx.29368.1.S1_at

Description tigr:9636.m02604
TID=OsAffx.29368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2642011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26360OsAffx.29364.1.S1_at4/118+15936918..15938639hypothetical protein
LOC_Os08g26370OsAffx.29365.1.S1_at11/118+15940199..15940859hypothetical protein
LOC_Os08g26380OsAffx.5934.1.S1_at11/118+15945914..15946369expressed protein
LOC_Os08g26390NANA8+15949502..15950868hypothetical protein
LOC_Os08g26400OsAffx.15648.1.S1_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26400OsAffx.19560.1.S1_x_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26409NANA8+15961112..15961408hypothetical protein
LOC_Os08g26420OsAffx.29368.1.S1_at11/118+15962934..15964091hypothetical protein
LOC_Os08g26430OsAffx.29313.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26430Os.14919.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26440OsAffx.19677.2.S1_x_at11/118+15978151..15978477hypothetical protein
LOC_Os08g26440OsAffx.19677.2.S1_s_at9/118+15978151..15978477hypothetical protein
LOC_Os08g26450Os.27088.1.A1_x_at1/118+15981234..15986207retrotransposon protein, putative, unclassified
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29368.1.S1_at--757--2891Chr08:15964027..15964051 (25 bp)
AAGGTGGGATGAGCGGATGTGGAAA
LOC_Os08g26420
OsAffx.29368.1.S1_at--379--6212Chr08:15963992..15964016 (25 bp)
GAGGCTACAGATGGCCTTCATCTTC
LOC_Os08g26420
OsAffx.29368.1.S1_at--746--6172Chr12:19240821..19240842 (22 bp)
GAGGAGATTTTTAGAGGACTTGATT
NONE
OsAffx.29368.1.S1_at--1074--6532Chr12:19240816..19240840 (25 bp)
GATTTTTAGAGGACTTGATTTTGAA
NONE
OsAffx.29368.1.S1_at--459--6812Chr01:6881579..6881598 (20 bp)
GTTTCAAGCCATGGGTGACCGGCGA
NONE
OsAffx.29368.1.S1_at--138--10512Chr01:6881579..6881600 (22 bp)
TTCAAGCCATGGGTGACCGGCGAAT
NONE
OsAffx.29368.1.S1_at--908--9712Chr01:6881579..6881601 (23 bp)
TCAAGCCATGGGTGACCGGCGAATA
NONE
OsAffx.29368.1.S1_at--4--3232Chr01:6881579..6881602 (24 bp)
CAAGCCATGGGTGACCGGCGAATAG
NONE
OsAffx.29368.1.S1_at--869--2652Chr01:6881579..6881603 (25 bp)
AAGCCATGGGTGACCGGCGAATAGA
NONE
OsAffx.29368.1.S1_at--901--4332Chr01:6881582..6881606 (25 bp)
CCATGGGTGACCGGCGAATAGAGTT
NONE
OsAffx.29368.1.S1_at--563--7712Chr01:6881586..6881610 (25 bp)
GGGTGACCGGCGAATAGAGTTGCCT
NONE
Target Sequence 
AAGGTGGGATGAGCGGATGTGGAAAGCAGGCAGCAGAGGCTACAGATGGCCTTCATCTTCTCTTCCAAGAGGAGATTTTT
AGAGGACTTGATTTTGAAAAAATTAAGGAGAGGTTTCAAGCCATGGGTGACCGGCGAATAGAGTTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis