Browse Element(s) Details


OsAffx.5934.1.S1_at

Description tigr:9636.m02600
TID=OsAffx.5934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2638011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26330NANA8+15920204..15921017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26340NANA8+15929018..15929598hypothetical protein
LOC_Os08g26350Os.9543.1.S1_at11/118+15931705..15932864expressed protein
LOC_Os08g26350Os.50824.1.S1_x_at3/118+15931705..15932864expressed protein
LOC_Os08g26360OsAffx.29364.1.S1_at4/118+15936918..15938639hypothetical protein
LOC_Os08g26370OsAffx.29365.1.S1_at11/118+15940199..15940859hypothetical protein
LOC_Os08g26380OsAffx.5934.1.S1_at11/118+15945914..15946369expressed protein
LOC_Os08g26390NANA8+15949502..15950868hypothetical protein
LOC_Os08g26400OsAffx.15648.1.S1_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26400OsAffx.19560.1.S1_x_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26409NANA8+15961112..15961408hypothetical protein
LOC_Os08g26420OsAffx.29368.1.S1_at11/118+15962934..15964091hypothetical protein
LOC_Os08g26430OsAffx.29313.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26430Os.14919.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5934.1.S1_at--1066--2212Chr08:16023389..16023413 (25 bp)
ACAATATCACATTTCACTCAAAAAC
NONE
OsAffx.5934.1.S1_at--417--3071Chr08:15945970..15945994 (25 bp)
AATCAAGAACGTTCATCCTGTTGCA
LOC_Os08g26380
OsAffx.5934.1.S1_at--5--1451Chr08:15945975..15945999 (25 bp)
AGAACGTTCATCCTGTTGCAAACAA
LOC_Os08g26380
OsAffx.5934.1.S1_at--805--6731Chr08:15945980..15946004 (25 bp)
GTTCATCCTGTTGCAAACAACGTTT
LOC_Os08g26380
OsAffx.5934.1.S1_at--1048--8992Chr08:15945991..15946015 (25 bp)
TGCAAACAACGTTTGGACCCAAACA
LOC_Os08g26380
OsAffx.5934.1.S1_at--743--5811Chr08:15946006..15946030 (25 bp)
GACCCAAACAAGAACCCATATCCAT
LOC_Os08g26380
OsAffx.5934.1.S1_at--471--1433Chr08:16023461..16023485 (25 bp)
AGAACCCATATCCATATTTCCCTTT
NONE
OsAffx.5934.1.S1_at--252--5531Chr08:15946075..15946099 (25 bp)
GAAAACCCTTGCCAATGAACCCATC
LOC_Os08g26380
OsAffx.5934.1.S1_at--410--3631Chr08:15946082..15946106 (25 bp)
CTTGCCAATGAACCCATCGCGCTGT
LOC_Os08g26380
OsAffx.5934.1.S1_at--675--6031Chr08:15946223..15946247 (25 bp)
GAGATGAAGACCTTGCCATACCTCC
LOC_Os08g26380
OsAffx.5934.1.S1_at--966--1331Chr08:15946299..15946323 (25 bp)
AGAGGGAGAGGCACCTGCTTGCTGC
LOC_Os08g26380
Target Sequence 
ACAATATCACATTTCACTCAAAAACAAATCAAGAACGTTCATCCTGTTGCAAACAACGTTTGGACCCAAACAAGAACCCA
TATCCATATTTCCCTTTCCCCAAAAATCAAGAAAACCCAACGCAAATTCAAGAAAACCCTTGCCAATGAACCCATCGCGC
TGTCCTCATCATCCTCCTTGCCTCCGTGGCAGTCCCGAGCTCAGGGGCTGGCGGATCTAGCCCCCGCCACCGCGTGCCTC
CTCCTACACCTCGCAGGAGAGGAGAGGAAAGGAAGGGTGGAGATGAAGACCTTGCCATACCTCCTCGTCATCGGACCTCC
TTGCCACAAACAATTTGACCCCCCGCCGATCGGGGAGAGGGAGAGGCACCTGCTTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis