Browse Element(s) Details


Os.9543.1.S1_at

Description gb:AU085732
DB_XREF= gi:7332386
DB_XREF=AU085732
CLONE=C52093
TID=Os.9543.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9543 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26300Os.46012.2.S1_x_at10/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.46012.3.S1_x_at6/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.27088.1.A1_x_at6/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.54691.1.S1_x_at1/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26310OsAffx.5933.1.S1_at10/118+15915340..15916671hypothetical protein
LOC_Os08g26310Os.33341.2.S1_x_at1/118+15915340..15916671hypothetical protein
LOC_Os08g26320OsAffx.17170.1.S1_at2/118+15917432..15918313hypothetical protein
LOC_Os08g26330NANA8+15920204..15921017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26340NANA8+15929018..15929598hypothetical protein
LOC_Os08g26350Os.9543.1.S1_at11/118+15931705..15932864expressed protein
LOC_Os08g26350Os.50824.1.S1_x_at3/118+15931705..15932864expressed protein
LOC_Os08g26360OsAffx.29364.1.S1_at4/118+15936918..15938639hypothetical protein
LOC_Os08g26370OsAffx.29365.1.S1_at11/118+15940199..15940859hypothetical protein
LOC_Os08g26380OsAffx.5934.1.S1_at11/118+15945914..15946369expressed protein
LOC_Os08g26390NANA8+15949502..15950868hypothetical protein
LOC_Os08g26400OsAffx.15648.1.S1_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26400OsAffx.19560.1.S1_x_at1/118+15951462..15953759Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9543.1.S1_at--432--5091Chr08:15931920..15931944 (25 bp)
GCACCGTATATACACAAATAATCAT
LOC_Os08g26350
Os.9543.1.S1_at--986--8812Chr08:15931875..15931899 (25 bp)
TGTTGTCGTGTATCTTTCTGTAAAT
LOC_Os08g26350
Os.9543.1.S1_at--705--7192Chr08:15931871..15931895 (25 bp)
GTCGTGTATCTTTCTGTAAATACAT
LOC_Os08g26350
Os.9543.1.S1_at--1079--2251Chr08:15931854..15931878 (25 bp)
AAATACATGTTTGGGAGCAGCAACG
LOC_Os08g26350
Os.9543.1.S1_at--1143--211Chr08:15931848..15931872 (25 bp)
ATGTTTGGGAGCAGCAACGAACCTA
LOC_Os08g26350
Os.9543.1.S1_at--552--10251Chr08:15931845..15931869 (25 bp)
TTTGGGAGCAGCAACGAACCTAGAT
LOC_Os08g26350
Os.9543.1.S1_at--202--7651Chr08:15931842..15931866 (25 bp)
GGGAGCAGCAACGAACCTAGATATG
LOC_Os08g26350
Os.9543.1.S1_at--48--6292Chr08:15931772..15931796 (25 bp)
GATGTATTCGATTTGTTCATTGGTT
LOC_Os08g26350
Os.9543.1.S1_at--872--6852Chr08:15931769..15931793 (25 bp)
GTATTCGATTTGTTCATTGGTTTAT
LOC_Os08g26350
Os.9543.1.S1_at--80--9372Chr08:15931765..15931789 (25 bp)
TCGATTTGTTCATTGGTTTATTACT
LOC_Os08g26350
Os.9543.1.S1_at--91--6811Chr08:15931750..15931774 (25 bp)
GTTTATTACTGATCGGTCAGTGATC
LOC_Os08g26350
Target Sequence 
GCACCGTATATACACAAATAATCATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGG
GAGCAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTCGAT
TTGTTCATTGGTTTATTACTGATCGGTCAGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis