Browse Element(s) Details


OsAffx.5933.1.S1_at

Description tigr:9636.m02592
TID=OsAffx.5933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2631010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26290NANA8+15891371..15894703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26300Os.46012.2.S1_x_at10/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.46012.3.S1_x_at6/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.27088.1.A1_x_at6/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26300Os.54691.1.S1_x_at1/118+15906485..15908920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26310OsAffx.5933.1.S1_at10/118+15915340..15916671hypothetical protein
LOC_Os08g26310Os.33341.2.S1_x_at1/118+15915340..15916671hypothetical protein
LOC_Os08g26320OsAffx.17170.1.S1_at2/118+15917432..15918313hypothetical protein
LOC_Os08g26330NANA8+15920204..15921017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26340NANA8+15929018..15929598hypothetical protein
LOC_Os08g26350Os.9543.1.S1_at11/118+15931705..15932864expressed protein
LOC_Os08g26350Os.50824.1.S1_x_at3/118+15931705..15932864expressed protein
LOC_Os08g26360OsAffx.29364.1.S1_at4/118+15936918..15938639hypothetical protein
LOC_Os08g26370OsAffx.29365.1.S1_at11/118+15940199..15940859hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5933.1.S1_at--136--7771Chr08:15915447..15915471 (25 bp)
GGTGATGGCGCCTACGAGCGACAAC
LOC_Os08g26310
OsAffx.5933.1.S1_at--205--6231Chr08:15915450..15915474 (25 bp)
GATGGCGCCTACGAGCGACAACGAC
LOC_Os08g26310
OsAffx.5933.1.S1_at--734--871Chr08:15915451..15915475 (25 bp)
ATGGCGCCTACGAGCGACAACGACG
LOC_Os08g26310
OsAffx.5933.1.S1_at--289--4611NONE
GCGACGAGGAGATTACAAAGATGCC
NONE
OsAffx.5933.1.S1_at--542--6171Chr08:15916558..15916579 (22 bp)
GAGGAGATTACAAAGATGCCAGTTC
LOC_Os08g26310
OsAffx.5933.1.S1_at--963--6351Chr08:15916569..15916593 (25 bp)
GATGCCAGTTCTAGAATCCGGCACC
LOC_Os08g26310
OsAffx.5933.1.S1_at--836--4411Chr08:15916572..15916596 (25 bp)
GCCAGTTCTAGAATCCGGCACCGAT
LOC_Os08g26310
OsAffx.5933.1.S1_at--1094--3431Chr08:15916574..15916598 (25 bp)
CAGTTCTAGAATCCGGCACCGATGA
LOC_Os08g26310
OsAffx.5933.1.S1_at--527--9531Chr08:15916578..15916602 (25 bp)
TCTAGAATCCGGCACCGATGACAGA
LOC_Os08g26310
OsAffx.5933.1.S1_at--289--10031Chr08:15916580..15916604 (25 bp)
TAGAATCCGGCACCGATGACAGAAG
LOC_Os08g26310
OsAffx.5933.1.S1_at--48--551Chr08:15916584..15916608 (25 bp)
ATCCGGCACCGATGACAGAAGTGGT
LOC_Os08g26310
Target Sequence 
GGTGATGGCGCCTACGAGCGACAACGACGACTACCGCGCCACGACGACGACTACCGCCGGCCACGTCGCTTCCCCTCTCC
GCGACCCCTCCTCTCCCAGATCCGGCGGCGCCTCAGCGGGGAGGGCCGGTGGCGGCAGCGGTTCGGCGGGGAGGTCCGGT
GGCAGCTCGGCGAGGCTCGGCGACGAGGAGATTACAAAGATGCCAGTTCTAGAATCCGGCACCGATGACAGAAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis