Browse Element(s) Details


Os.9200.1.S1_at

Description gb:AK099723.1
DB_XREF= gi:32984932
TID=Os.9200.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089A06, full insert sequence.
FL= gb:AK099723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g277691/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9200.1.S1_at--991--5771Chr02:16439913..16440080 (25 bp)
GACGAGATGGTGCTATCCAACGACA
NONE
Os.9200.1.S1_at--108--3231Chr02:16440333..16440356 (24 bp)
CAAGTGCCAGGGATGCTTCAACATA
LOC_Os02g27769
Os.9200.1.S1_at--75--2091Chr02:16441067..16441087 (21 bp)
ACATAACAACCGTGTTCAGCCACTC
NONE
Os.9200.1.S1_at--826--1391Chr02:16441090..16441114 (25 bp)
AGACTGTTGTTGTGTGCCCAGGCTG
NONE
Os.9200.1.S1_at--39--6131Chr02:16441193..16441217 (25 bp)
GAGTGTGAGTCGTTCATTCAGAAGA
NONE
Os.9200.1.S1_at--427--5371Chr02:16441213..16441237 (25 bp)
GAAGACGATGTTTTTGTGCCAAGCA
NONE
Os.9200.1.S1_at--363--10831Chr02:16441226..16441250 (25 bp)
TTGTGCCAAGCAAGTGTTCCACCTC
NONE
Os.9200.1.S1_at--573--6691Chr02:16441241..16441265 (25 bp)
GTTCCACCTCCAAGGATGTAGTCTT
NONE
Os.9200.1.S1_at--851--7991Chr02:16441254..16441278 (25 bp)
GGATGTAGTCTTCGAGTTTTGCTCT
NONE
Os.9200.1.S1_at--402--7431Chr02:16441307..16441331 (25 bp)
GTGTTATGTTATGTATCCCGAGCTA
NONE
Os.9200.1.S1_at--700--5671Chr02:16441463..16441487 (25 bp)
GACATCTCGTTTTGTGTTTGACAGT
NONE
Target Sequence 
GACGAGATGGTGCTATCCAACGACATCGACCTCCTCAACCCTCCCGCGGAGCTCGAGAAGCNCAAGCACAAGAAGAAGCG
CCTCGTGCAGTCCCCCAACTCATTCTTCATGGATGTCAAGTGCCAGGGATGCTTCAACATAACAACCGTGTTCAGCCACT
CCCAGACTGTTGTTGTGTGCCCAGGCTGCCAAACGGTGCTCTGCCAGCCCACAGGAGGGAAGGCCAGGCTCACCGAGGGC
TGCTCCTTCCGCCGGAAGGGCGACTAGAGTGTGAGTCGTTCATTCAGAAGACGATGTTTTTGTGCCAAGCAAGTGTTCCA
CCTCCAAGGATGTAGTCTTCGAGTTTTGCTCTAGTTAGCACAGAAATATCTATTTTGCAAGTGTTATGTTATGTATCCCG
AGCTACTTNTGAACATTGTCATCNTGGAGGTCTAATTAGTTGGGTTTATTTGAGATTGTTCGATGAACTAAATTGGTGGT
TGATAGTCTCAGGGGCAAACTGTTTGAATTATAAGCTGGTGTGGAAGATATTTATTGACATCTCGTTTTGTGTTTGACAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis