Browse Element(s) Details


OsAffx.12235.1.S1_at

Description tigr:9630.m02641
TID=OsAffx.12235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2778011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12235.1.S1_at--711--9511Chr02:16443456..16443480 (25 bp)
TCTCGGGCACAAAGTGCGCACAGCA
LOC_Os02g27780
OsAffx.12235.1.S1_at--1101--5111Chr02:16443450..16443474 (25 bp)
GCACAAAGTGCGCACAGCAGCAACG
LOC_Os02g27780
OsAffx.12235.1.S1_at--332--6611Chr02:16443349..16443373 (25 bp)
GTTGGAGGCAGTGGGCTACGGCGAC
LOC_Os02g27780
OsAffx.12235.1.S1_at--360--4811Chr02:16443335..16443359 (25 bp)
GCTACGGCGACGAGTCTGCAGCCCT
LOC_Os02g27780
OsAffx.12235.1.S1_at--311--4611Chr02:16443329..16443353 (25 bp)
GCGACGAGTCTGCAGCCCTCTCAAG
LOC_Os02g27780
OsAffx.12235.1.S1_at--1036--4091Chr02:16443299..16443323 (25 bp)
CGACTATGACGACGAGGTGACAAGT
LOC_Os02g27780
OsAffx.12235.1.S1_at--376--6151Chr02:16443286..16443310 (25 bp)
GAGGTGACAAGTCCTCAACTCAGGG
LOC_Os02g27780
OsAffx.12235.1.S1_at--332--7131Chr02:16443241..16443265 (25 bp)
GTCATCCTTCCAGGCGGAGGCAGAG
LOC_Os02g27780
OsAffx.12235.1.S1_at--230--4611Chr02:16443216..16443240 (25 bp)
GCGACGGCGATGCTAATGCTCCCTT
LOC_Os02g27780
OsAffx.12235.1.S1_at--590--3792Chr05:10893644..10893746 (24 bp)
CTCGTTGTCATCGTCATCTTGGATC
NONE
OsAffx.12235.1.S1_at--865--10811Chr02:16443162..16443186 (25 bp)
TTGTCATCGTCATCTTGGATCTCAA
LOC_Os02g27780
Target Sequence 
TCTCGGGCACAAAGTGCGCACAGCAGCAACGGGGCGGACGGGCAGTCGGCGCGTGGGGGCCAGCGACGGAACGCGGAGAG
GGCATGGCGAGGGGCGCCGAGGAGAGCGTTGGAGGCAGTGGGCTACGGCGACGAGTCTGCAGCCCTCTCAAGCTCCACGA
CTATGACGACGAGGTGACAAGTCCTCAACTCAGGGGGGCGGTGGGCGTCGTCGAGGTCATCCTTCCAGGCGGAGGCAGAG
GCGACGGCGATGCTAATGCTCCCTTCCCTGGAGACGGCGGTGAGGTAGCCCTCGTTGTCATCGTCATCTTGGATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis