Browse Element(s) Details


Os.47877.1.S1_at

Description gb:AB110198.1
DB_XREF= gi:32352193
TID=Os.47877.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AR004
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AR004.
FL= gb:AB110198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2781010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47877.1.S1_at--392--5911Chr02:16460553..16460577 (25 bp)
GAGCTCTCTGAGATATTCCAGTGGA
LOC_Os02g27810
Os.47877.1.S1_at--699--2111Chr02:16460426..16460450 (25 bp)
ACATGTGCGGAGTCGATCTTGGCAG
LOC_Os02g27810
Os.47877.1.S1_at--723--4771Chr02:16460400..16460424 (25 bp)
GCTGCTCTACGCAAGCTGGAGATCA
LOC_Os02g27810
Os.47877.1.S1_at--1047--6451Chr02:16460380..16460404 (25 bp)
GATCAATGCACGCAAGTACCCAGCA
LOC_Os02g27810
Os.47877.1.S1_at--564--3731Chr02:16460323..16460347 (25 bp)
CTACTACAGCTCCAGATGCGATGTT
LOC_Os02g27810
Os.47877.1.S1_at--660--3891Chr02:16460177..16460201 (25 bp)
CTGGTTCTTGCGTTTAGTGATCCTC
LOC_Os02g27810
Os.47877.1.S1_at--603--1111Chr02:16460162..16460186 (25 bp)
AGTGATCCTCGCTAATTATGTGCCG
LOC_Os02g27810
Os.47877.1.S1_at--83--911Chr02:16460126..16460150 (25 bp)
AGGCATTGATCTCTTTTGGTGGTAA
LOC_Os02g27810
Os.47877.1.S1_at--404--7431Chr02:16460081..16460105 (25 bp)
GTGTTTGATTAGCTGTCCTCTTTAA
LOC_Os02g27810
Os.47877.1.S1_at--374--2871Chr02:16460038..16460062 (25 bp)
AAGTGTTGGTCCAGCTACATAGCTA
LOC_Os02g27810
Os.47877.1.S1_at--777--671Chr02:16460013..16460037 (25 bp)
ATGAAATGGTATCCAGCTTCTGCTT
NONE
Target Sequence 
GAGCTCTCTGAGATATTCCAGTGGAAAGGGGAGGTGCCCAAGGGGCTCCCCGGCTGGGACGAGGCGGAGAAGGTGCACTT
GGGGGAGGAGCTGGCCGATGTGCTCCTCTACCTCGTCAGGCTGTCGGACATGTGCGGAGTCGATCTTGGCAGCGCTGCTC
TACGCAAGCTGGAGATCAATGCACGCAAGTACCCAGCAAGCCAGTGCAAGGGCTCATCCAAGAAGCATACCTACTACAGC
TCCAGATGCGATGTTAGTGGTAACAGCAACGGCACCAACCATCTCACCTCTAACGAGGAGCATGACAACAACACCAGCAG
CAACAACGANAACAATGGAGTCTAAGACTTATAGAGCAGCTTGGATGGTAGCTTGGCTGGTTCTTGCGTTTAGTGATCCT
CGCTAATTATGTGCCGATACAGGNAGTAGGCATTGATCTCTTTTGGTGGTAAAGAATCAAGTTTATCTAGTTGTGTTTGA
TTAGCTGTCCTCTTTAATTAGATGCCTAGAGAGTCAAGTGTTGGTCCAGCTACATAGCTAATGAAATGGTATCCAGCTTC
TGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis