Browse Element(s) Details


OsAffx.2770.1.S1_s_at

Description tigr:9630.m02639
TID=OsAffx.2770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S8, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2776010/1140S ribosomal protein S15a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005830cellular_componentcytosolic ribosome (sensu Eukaryota)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2770.1.S1_s_at--983--2671Chr02:16435761..16435785 (25 bp)
AAGCGGCAAGTGATGATCCGACCCT
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--367--5831Chr02:16435775..16435799 (25 bp)
GATCCGACCCTCATCAAAGGTTATC
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--736--7871Chr02:16435793..16435817 (25 bp)
GGTTATCATCAAGTTTCTCATCGTG
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--879--1931Chr02:16435952..16435974 (23 bp)
ACGGCTACATTGGTGAATTTGAGTT
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--121--8931Chr02:16435981..16436005 (25 bp)
TGACCACCGCTCTGGCAAAATTGTT
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--81--10751Chr02:16436001..16436025 (25 bp)
TTGTTGTTGAGCTGAACGGACGCCT
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--386--5251Chr02:16436078..16436102 (25 bp)
GAATCATGGACTGCGAGGCTGCTTC
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--881--6191NONE
GAGGCTGCTTCCCTCCAGACAGTTT
NONE
OsAffx.2770.1.S1_s_at--243--9891Chr02:16436217..16436241 (25 bp)
TACATTGTCCTTACTACTTCAGCTG
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--57--9251Chr02:16436224..16436248 (25 bp)
TCCTTACTACTTCAGCTGGCATTAT
LOC_Os02g27760
OsAffx.2770.1.S1_s_at--678--3571Chr02:16436243..16436267 (25 bp)
CATTATGGACCATGAGGAGGCTCGC
LOC_Os02g27760
Target Sequence 
AAGCGGCAAGTGATGATCCGACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGGCTACATTGG
TGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCA
TCAGCCCTCGCTTCGATGTTGGTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGTTTGGGTAC
ATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAGGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2770.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis