Browse Element(s) Details


OsAffx.24464.1.S1_s_at

Description tigr:9630.m02637
TID=OsAffx.24464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2774011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27680OsAffx.24458.4.S1_at11/112+16398585..16399403NB-ARC domain containing protein
LOC_Os02g27690OsAffx.24458.3.S1_at11/112+16400342..16402242Leucine Rich Repeat family protein
LOC_Os02g27700NANA2+16403468..16403885hypothetical protein
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24464.1.S1_s_at--372--5671Chr02:16424192..16424216 (25 bp)
GACATGATTCAAACTATGCCCCTAG
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--354--2991Chr02:16424242..16424266 (25 bp)
AATGACTCAGATTTTGGAACCCAAT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--628--5331Chr02:16424273..16424297 (25 bp)
GAAGTTTCCGACATGATCCAAGTTT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--475--4371Chr02:16424290..16424314 (25 bp)
CCAAGTTTCAGGAACCAGCACGGTT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--855--2371Chr02:16424385..16424409 (25 bp)
AAACCGCGTGATGTCTTCTGAAGAT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--899--351Chr02:16424445..16424469 (25 bp)
ATAAGCATGATCTTGCCGAGTGCGA
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--495--3171Chr02:16424483..16424507 (25 bp)
AATTGTACAACTGAAGCGTGCTGAT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--28--4671Chr02:16424498..16424522 (25 bp)
GCGTGCTGATTTTGTAACTCTGTTA
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--454--9771Chr02:16424567..16424591 (25 bp)
TAATGTCAATGTGTCCCTTCATCGT
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--1016--7231Chr02:16424579..16424603 (25 bp)
GTCCCTTCATCGTTGAGACTTGAGA
LOC_Os02g27740
OsAffx.24464.1.S1_s_at--1103--6911Chr02:16424619..16424643 (25 bp)
GTAGGAATCATCACCTGCCTTTTAC
LOC_Os02g27740
Target Sequence 
GACATGATTCAAACTATGCCCCTAGAAACATGGAAAATAAATTTGGTTCAAATGACTCAGATTTTGGAACCCAATCTGGT
AGAAGTTTCCGACATGATCCAAGTTTCAGGAACCAGCACGGTTTGAATTTCCAAAATGAATCAAGTTTCAGAAATCACCA
GTATCCAAATTTCCAAAACCAACGAGACCCAAGAAACCGCGTGATGTCTTCTGAAGATCAGGAATTGATGTCTTCTGATG
ATCAGGAATTCTAATAAGCATGATCTTGCCGAGTGCGAGGTGGCCAGTGAAAATTGTACAACTGAAGCGTGCTGATTTTG
TAACTCTGTTAAGCATAAACAGAATGAAATGCATTTTACATTGGCAACTGTAGTATAATGTCAATGTGTCCCTTCATCGT
TGAGACTTGAGAGAAGGGTTGAGTGTTGTAGGAATCATCACCTGCCTTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24464.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis