Browse Element(s) Details


OsAffx.24458.4.S1_at

Description tigr:9630.m02631
TID=OsAffx.24458.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF458276 rga2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2768011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27660OsAffx.12229.2.S1_x_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27660OsAffx.12229.2.S1_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27670OsAffx.24457.1.S1_at11/112+16389892..16391316hypothetical protein
LOC_Os02g27670OsAffx.26697.1.S1_at1/112+16389892..16391316hypothetical protein
LOC_Os02g27680OsAffx.24458.4.S1_at11/112+16398585..16399403NB-ARC domain containing protein
LOC_Os02g27690OsAffx.24458.3.S1_at11/112+16400342..16402242Leucine Rich Repeat family protein
LOC_Os02g27700NANA2+16403468..16403885hypothetical protein
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24458.4.S1_at--102--591Chr02:16398870..16398894 (25 bp)
ATCCAACTTGTTTCTCAGGACGGCG
LOC_Os02g27680
OsAffx.24458.4.S1_at--1122--8111Chr02:16398887..16398911 (25 bp)
GGACGGCGAGAATCATCACATTATC
LOC_Os02g27680
OsAffx.24458.4.S1_at--116--1111Chr02:16398997..16399021 (25 bp)
AGTGTGCCTGGGTCACTGTATCACA
LOC_Os02g27680
OsAffx.24458.4.S1_at--1102--3311Chr02:16399010..16399034 (25 bp)
CACTGTATCACATCCTTTTAACCTT
LOC_Os02g27680
OsAffx.24458.4.S1_at--327--3571Chr02:16399035..16399059 (25 bp)
CATAATTTCATTACGAGCTTAGCCC
LOC_Os02g27680
OsAffx.24458.4.S1_at--1134--1551Chr02:16399050..16399074 (25 bp)
AGCTTAGCCCATGAATTAGATTCAA
LOC_Os02g27680
OsAffx.24458.4.S1_at--5--6571Chr02:16399068..16399092 (25 bp)
GATTCAAACGATTTTAGTGTTCTTG
LOC_Os02g27680
OsAffx.24458.4.S1_at--500--10072Chr02:16399082..16399106 (25 bp)
TAGTGTTCTTGGAAATGGCTTGCAG
LOC_Os02g27680
OsAffx.24458.4.S1_at--528--2793Chr02:16399134..16399158 (25 bp)
AAGAGGAGATGCCTCCTTGTCCTTG
LOC_Os02g27680
OsAffx.24458.4.S1_at--566--6451Chr02:16399190..16399214 (25 bp)
GATAAAACCACATTTGCCTAGTGAA
LOC_Os02g27680
OsAffx.24458.4.S1_at--441--5511Chr02:16399337..16399361 (25 bp)
GAACAAGGCATTCCTACTAGTCCTA
LOC_Os02g27680
Target Sequence 
ATCCAACTTGTTTCTCAGGACGGCGAGAATCATCACATTATCTCCATATGGGGAATGATTGGTGTTGGCAAAACATCCTT
CATTAGGAGTGTCTATGAAAGCGAAGAAATCACTAGCATGTTTGAGCAGTGTGCCTGGGTCACTGTATCACATCCTTTTA
ACCTTCATAATTTCATTACGAGCTTAGCCCATGAATTAGATTCAAACGATTTTAGTGTTCTTGGAAATGGCTTGCAGAAG
AGTGAAGAATCAATCAAGGCTTCAAAGAGGAGATGCCTCCTTGTCCTTGATGATGTATCATCTATTGAAGAATGGAGCTT
GATAAAACCACATTTGCCTAGTGAAACAAACACAAAGATCATAGTCACCACGAGAGAAGCAAGTATTGCTGAGCATTGCT
CGATGACATGCAAAAACATATATAAGCTGGAAGGTCTTAAAGAAGATGCGGCACTTGCACTCTTCAAGAACAAGGCATTC
CTACTAGTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24458.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis