Browse Element(s) Details


OsAffx.24458.3.S1_at

Description tigr:9630.m02632
TID=OsAffx.24458.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR type resistance gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2769011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27660OsAffx.12229.2.S1_x_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27660OsAffx.12229.2.S1_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27670OsAffx.24457.1.S1_at11/112+16389892..16391316hypothetical protein
LOC_Os02g27670OsAffx.26697.1.S1_at1/112+16389892..16391316hypothetical protein
LOC_Os02g27680OsAffx.24458.4.S1_at11/112+16398585..16399403NB-ARC domain containing protein
LOC_Os02g27690OsAffx.24458.3.S1_at11/112+16400342..16402242Leucine Rich Repeat family protein
LOC_Os02g27700NANA2+16403468..16403885hypothetical protein
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24458.3.S1_at--314--9991Chr02:16401648..16401672 (25 bp)
TAGCCAAGTTGTCCTATCTGTCATT
LOC_Os02g27690
OsAffx.24458.3.S1_at--636--6611Chr02:16401655..16401679 (25 bp)
GTTGTCCTATCTGTCATTGCAAACC
LOC_Os02g27690
OsAffx.24458.3.S1_at--912--1791Chr02:16401903..16401927 (25 bp)
ACCGCATTTGGCCATTTTGCGACTA
LOC_Os02g27690
OsAffx.24458.3.S1_at--303--10291Chr02:16401918..16401942 (25 bp)
TTTGCGACTATGGATGAACTCTTTT
LOC_Os02g27690
OsAffx.24458.3.S1_at--516--2331Chr02:16401949..16401973 (25 bp)
AAAGAACTCTGTTTCAATTTTCAGC
LOC_Os02g27690
OsAffx.24458.3.S1_at--40--5191Chr02:16401972..16401996 (25 bp)
GCAAGGGACTTTCCTGAGTCTTGTA
LOC_Os02g27690
OsAffx.24458.3.S1_at--824--7991Chr02:16402018..16402042 (25 bp)
GGAGGCCTCAAGTCATTAACCTTCA
LOC_Os02g27690
OsAffx.24458.3.S1_at--1158--6051Chr02:16402066..16402090 (25 bp)
GAGTTGCTGCAGATCGATAATTGTA
LOC_Os02g27690
OsAffx.24458.3.S1_at--9--5531Chr02:16402102..16402126 (25 bp)
GAAAATGGGCTTTCTGGTGTGTCAT
LOC_Os02g27690
OsAffx.24458.3.S1_at--987--5371Chr02:16402171..16402195 (25 bp)
GAAGAACTCATGAAGAACCTGTGTG
LOC_Os02g27690
OsAffx.24458.3.S1_at--491--2631Chr02:16402186..16402210 (25 bp)
AACCTGTGTGACCAGATCACTCTGA
LOC_Os02g27690
Target Sequence 
TAGCCAAGTTGTCCTATCTGTCATTGCAAACCTTGCCCTCTTACACTCATTATCATTGCAAGCAGAGGGGGAACCAGGTT
TACAAGGTTGTTTGGATCACACATTCGCACCTCTAAGTAAGCTTCAAAGCCTCAAGATTTATGGAAATCTAGTTACACTG
CCAACATGGATCACCCAAATTCAGAATTTGACTAAGCTGAAGCTACGGAGCACCCAGTTGAAGCTGGATCTTTTCTTGGA
AGTCCTTGGGAAGCTACCGCATTTGGCCATTTTGCGACTATGGATGAACTCTTTTCAGAGCAAAGAACTCTGTTTCAATT
TTCAGCAAGGGACTTTCCTGAGTCTTGTAGTGATGGAGCTGAAAGATCAAGGAGGCCTCAAGTCATTAACCTTCATGCAA
GGAGCGATGCCAAGGCTTGAGTTGCTGCAGATCGATAATTGTATACACATTGACGAAAATGGGCTTTCTGGTGTGTCATC
TCTTCCAAGCCTGAGAGAAGTTATGCTCAAGGGTGACCACAACGAAGAACTCATGAAGAACCTGTGTGACCAGATCACTC
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24458.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis