Browse Element(s) Details


OsAffx.12229.2.S1_at

Description tigr:9630.m02629
TID=OsAffx.12229.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2766010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27630Os.46995.1.S1_x_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27630Os.46995.1.S1_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27660OsAffx.12229.2.S1_x_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27660OsAffx.12229.2.S1_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27670OsAffx.24457.1.S1_at11/112+16389892..16391316hypothetical protein
LOC_Os02g27670OsAffx.26697.1.S1_at1/112+16389892..16391316hypothetical protein
LOC_Os02g27680OsAffx.24458.4.S1_at11/112+16398585..16399403NB-ARC domain containing protein
LOC_Os02g27690OsAffx.24458.3.S1_at11/112+16400342..16402242Leucine Rich Repeat family protein
LOC_Os02g27700NANA2+16403468..16403885hypothetical protein
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12229.2.S1_at--175--8651Chr02:16385118..16385142 (25 bp)
TGGGAAAACCCTAGATCAGGATGAT
LOC_Os02g27660
OsAffx.12229.2.S1_at--549--991Chr02:16385090..16385114 (25 bp)
AGGAGGCATGGCACGAGAGGGAGGA
LOC_Os02g27660
OsAffx.12229.2.S1_at--1055--971Chr02:16385069..16385093 (25 bp)
AGGAGAGCAGGTGGCACGACTCCCC
LOC_Os02g27660
OsAffx.12229.2.S1_at--886--1051Chr02:16385061..16385085 (25 bp)
AGGTGGCACGACTCCCCCGAGCAGG
LOC_Os02g27660
OsAffx.12229.2.S1_at--1023--4071Chr02:16385044..16385068 (25 bp)
CGAGCAGGTGGCGCGGCAGTTCGGC
LOC_Os02g27660
OsAffx.12229.2.S1_at--1115--1211NONE
AGTTCGGCGCGGATCGATCCTGGTA
NONE
OsAffx.12229.2.S1_at--808--10611Chr02:16384617..16385049 (25 bp)
TTCGGCGCGGATCGATCCTGGTACA
LOC_Os02g27660
OsAffx.12229.2.S1_at--432--8391Chr02:16384614..16384850 (25 bp)
GGCGCGGATCGATCCTGGTACAGCA
LOC_Os02g27660
OsAffx.12229.2.S1_at--341--4151Chr02:16384612..16384633 (22 bp)
CGCGGATCGATCCTGGTACAGCATA
LOC_Os02g27660
OsAffx.12229.2.S1_at--68--4691Chr02:16384611..16384633 (23 bp)
GCGGATCGATCCTGGTACAGCATAT
LOC_Os02g27660
OsAffx.12229.2.S1_at--201--3971Chr02:16384610..16384633 (24 bp)
CGGATCGATCCTGGTACAGCATATT
LOC_Os02g27660
Target Sequence 
TGGGAAAACCCTAGATCAGGATGATGGGAGGAGGCATGGCACGAGAGGGAGGAGAGCAGGTGGCACGACTCCCCCGAGCA
GGTGGCGCGGCAGTTCGGCGCGGATCGATCCTGGTACAGCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12229.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis