Browse Element(s) Details


OsAffx.7656.2.S1_x_at

Description tigr:9630.m02643
TID=OsAffx.7656.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g278005/11hypothetical protein
LOC_Os12g222701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7656.2.S1_x_at--381--5193Chr12:12554024..12554048 (25 bp)
GCAAGGCGCTGAACAGCACGGCCGA
LOC_Os12g22270
OsAffx.7656.2.S1_x_at--1125--3331Chr02:16449580..16449600 (21 bp)
CACGGGCTCCGTGCGCTACGGGTTT
LOC_Os02g27800
OsAffx.7656.2.S1_x_at--608--4791NONE
GCTCCGTGCGCTACGGGTTTCGTCA
NONE
OsAffx.7656.2.S1_x_at--326--3951NONE
CGCTACGGGTTTCGTCACGCCCAGC
NONE
OsAffx.7656.2.S1_x_at--327--4611Chr02:16449451..16449475 (25 bp)
GCGACGTGCTTCACGGCGCGCTGTC
LOC_Os02g27800
OsAffx.7656.2.S1_x_at--782--1791Chr02:16449394..16449418 (25 bp)
ACCGCAACGTGGTGGCGTGCTTCTA
LOC_Os02g27800
OsAffx.7656.2.S1_x_at--139--3973Chr12:25562905..25562929 (25 bp)
CGGGGAGCTTCCTCTTCGCCATGTT
NONE
OsAffx.7656.2.S1_x_at--501--4471Chr02:16449239..16449263 (25 bp)
GCCTGACGCGCGTACACACGGATCG
NONE
OsAffx.7656.2.S1_x_at--995--3851Chr02:16449237..16449261 (25 bp)
CTGACGCGCGTACACACGGATCGAT
NONE
OsAffx.7656.2.S1_x_at--850--8932Chr12:25562797..25562858 (25 bp)
TGACGCGCGTACACACGGATCGATT
NONE
OsAffx.7656.2.S1_x_at--403--5812Chr12:25562796..25562816 (21 bp)
GACGCGCGTACACACGGATCGATTG
NONE
Target Sequence 
GCAAGGCGCTGAACAGCACGGCCGACCTCGCGAAGCACCTCCCGACCGGCGCCGTGCTCGCGTTCGAGGTGCTCTCGCCG
TCCTTCACCGCGGACGGCAGCTGCACGGCCGCCAACCGCGCGCTCACCGCCTGCCTCGTCGGCGCCTGCGCGCTCTGCTG
CTTCCTGCTCTGCTTCACCGACAGCTACCGCGACGCCACGGGCTCCGTGCGCTACGGGTTTCGTCACGCCCAGCGGCAGC
CTCCGCCTCATCGACTCCGGCTCCGGCTCCGGCTCGCCGCCGCCGCCGCCGCCGAGGGACGACAGGTACAGGCTGGGCGC
GCGCGACGTGCTTCACGGCGCGCTGTCGTTCGCGGTGTTCCTGGCCGTGGCCATGGTGGACCGCAACGTGGTGGCGTGCT
TCTACCCGGTGGAGTCGCCGGCGACGAGGCAACTGCTCGCGGCGGTGCCCATGGCGGCCGGCGCGGCGGGGAGCTTCCTC
TTCGCCATGTTCCCGTCGACGCGCCGCGGCATCGGCTTCCCCGTCGCGGCGGGCGCCTGACGCGCGTACACACGGATCGA
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7656.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis