Browse Element(s) Details


OsAffx.24465.1.S1_at

Description tigr:9630.m02642
TID=OsAffx.24465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap 155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit). (mouse
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2779011/11Splicing factor 3B subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24465.1.S1_at--963--6151Chr02:16446874..16446898 (25 bp)
GAGGATTTGCTTCGAGCTGCTTGAA
LOC_Os02g27790
OsAffx.24465.1.S1_at--652--10451Chr02:16446924..16446948 (25 bp)
TTAGACGAGCCACTGCGAACACATT
LOC_Os02g27790
OsAffx.24465.1.S1_at--60--8011Chr02:16446979..16447003 (25 bp)
GGATGTGTTGGCCACTCTATTGAAC
LOC_Os02g27790
OsAffx.24465.1.S1_at--561--971Chr02:16447017..16447041 (25 bp)
AGGAGCGTCAGAACCGAGTTTGCAC
LOC_Os02g27790
OsAffx.24465.1.S1_at--976--6071Chr02:16447032..16447056 (25 bp)
GAGTTTGCACTACTGTCGCAATCGC
LOC_Os02g27790
OsAffx.24465.1.S1_at--811--10371Chr02:16447089..16447113 (25 bp)
TTTTGCCTGCCCTTATGAACGAGTA
LOC_Os02g27790
OsAffx.24465.1.S1_at--264--6091Chr02:16447116..16447140 (25 bp)
GAGTACCAGAGTTCAATGTCCGTAA
LOC_Os02g27790
OsAffx.24465.1.S1_at--725--5331Chr02:16447150..16447174 (25 bp)
GAAGTCTCTGTCATTTCTTTTTGAA
LOC_Os02g27790
OsAffx.24465.1.S1_at--2--631Chr02:16447206..16447230 (25 bp)
ATGCTGTCACGCCATTGCTTGAAGA
LOC_Os02g27790
OsAffx.24465.1.S1_at--210--1291Chr02:16447246..16447270 (25 bp)
AGATCTGGTTCATCGGCAGACTGCT
LOC_Os02g27790
OsAffx.24465.1.S1_at--22--631Chr02:16447323..16447347 (25 bp)
ATGCTCTTGTCCACTTAACCTTGTC
LOC_Os02g27790
Target Sequence 
GAGGATTTGCTTCGAGCTGCTTGAAATGTTGAAGGCTCACAAGAAGGGTATTAGACGAGCCACTGCGAACACATTTGGCT
ATATTGCGAAGGCTATTGGGCCAGAGGATGTGTTGGCCACTCTATTGAACAACTTGAAGGTGCAGGAGCGTCAGAACCGA
GTTTGCACTACTGTCGCAATCGCCATTGTTGCTGAAACTTGCTCCCCCTTTACAGTTTTGCCTGCCCTTATGAACGAGTA
CCGAGTACCAGAGTTCAATGTCCGTAATGGTATTTTGAAGTCTCTGTCATTTCTTTTTGAATACATTGGTGAGATGGGTA
AAGATTACATATATGCTGTCACGCCATTGCTTGAAGATGCTCTGATGGATAGAGATCTGGTTCATCGGCAGACTGCTGCC
TCTGCTGTTAAGCACATGGCACTAGGTGTTGCTGGCTTGGGTTGTGAGGATGCTCTTGTCCACTTAACCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis