Browse Element(s) Details


OsAffx.17095.2.S1_at

Description tigr:9636.m02101
TID=OsAffx.17095.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2147411/11hypothetical protein
LOC_Os12g201301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21420Os.52323.1.S1_at1/118+12769622..12772861hypothetical protein
LOC_Os08g21434Os.47004.1.S1_at2/118+12773314..12777167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21434OsAffx.13882.2.S1_at1/118+12773314..12777167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21450NANA8+12780439..12780738transposon protein, putative, unclassified
LOC_Os08g21460OsAffx.20604.2.S1_at1/118+12784832..12788662retrotransposon protein, putative, unclassified
LOC_Os08g21460OsAffx.22699.1.S1_x_at1/118+12784832..12788662retrotransposon protein, putative, unclassified
LOC_Os08g21470OsAffx.23458.1.S1_x_at11/118+12790630..12791462hypothetical protein
LOC_Os08g21470OsAffx.26058.1.S1_at1/118+12790630..12791462hypothetical protein
LOC_Os08g21470OsAffx.16344.1.S1_at1/118+12790630..12791462hypothetical protein
LOC_Os08g21474OsAffx.17095.2.S1_at11/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.17095.2.S1_x_at11/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.19757.1.S1_at3/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.19946.1.S1_at2/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.26043.1.S1_x_at1/118+12793890..12796330hypothetical protein
LOC_Os08g21474OsAffx.26043.1.S1_at1/118+12793890..12796330hypothetical protein
LOC_Os08g21480NANA8+12797622..12800940retrotransposon protein, putative, unclassified
LOC_Os08g21490NANA8+12801288..12804504hypothetical protein
LOC_Os08g21500NANA8+12807539..12809237hypothetical protein
LOC_Os08g21520Os.54774.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520OsAffx.25367.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520Os.54774.1.S1_x_at1/118+12817070..12819139retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17095.2.S1_at--813--8711Chr08:12794009..12794033 (25 bp)
TGTCCCACGCAGGATAACACGGCGT
LOC_Os08g21474
OsAffx.17095.2.S1_at--63--4371Chr08:12794013..12794037 (25 bp)
CCACGCAGGATAACACGGCGTATGG
LOC_Os08g21474
OsAffx.17095.2.S1_at--1069--1411Chr08:12794040..12794064 (25 bp)
AGAAAAGCACCCCAAGAGGCGTCTT
LOC_Os08g21474
OsAffx.17095.2.S1_at--475--5511Chr08:12794041..12794065 (25 bp)
GAAAAGCACCCCAAGAGGCGTCTTC
LOC_Os08g21474
OsAffx.17095.2.S1_at--1031--3951Chr08:12796130..12796151 (22 bp)
CGGAGGAGAAGCACTCTTAAATGAA
LOC_Os08g21474
OsAffx.17095.2.S1_at--1160--9731Chr08:12796176..12796200 (25 bp)
TCAATCAATCGAAAGTCTGCCAGCG
LOC_Os08g21474
OsAffx.17095.2.S1_at--559--5571Chr08:12796186..12796210 (25 bp)
GAAAGTCTGCCAGCGATCTACAATT
LOC_Os08g21474
OsAffx.17095.2.S1_at--655--7171Chr08:12796190..12796214 (25 bp)
GTCTGCCAGCGATCTACAATTACAT
LOC_Os08g21474
OsAffx.17095.2.S1_at--1032--9191Chr08:12796193..12796217 (25 bp)
TGCCAGCGATCTACAATTACATGAG
LOC_Os08g21474
OsAffx.17095.2.S1_at--1072--93Chr08:12796208..12796229 (22 bp)
ATTACATGAGAAGGCCCAAAAGGGC
LOC_Os08g21474
OsAffx.17095.2.S1_at--813--5295Chr08:12796217..12796291 (25 bp)
GAAGGCCCAAAAGGGCCCACATGGA
LOC_Os08g21474
Target Sequence 
TGTCCCACGCAGGATAACACGGCGTATGGGGAGAAAAGCACCCCAAGAGGCGTCTTCCTCTTCACCACCAGTGCAGATGT
ATGGAGACAGTTGGGACCCGACCGCGCATGCCCTTGGTTGGACCCAATTCCGGCAACATGACGGCGGAGGAGAAGCACTC
TTAAATGAAGAGAAGGAGGTGGAAATATATCGATCAATCAATCGAAAGTCTGCCAGCGATCTACAATTACATGAGAAGGC
CCAAAAGGGCCCACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17095.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis