Browse Element(s) Details


OsAffx.26058.1.S1_at

Description tigr:9632.m01637
TID=OsAffx.26058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1819011/11Zinc knuckle family protein
LOC_Os11g224802/11hypothetical protein
LOC_Os08g214701/11hypothetical protein
LOC_Os12g189701/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18140Os.52917.1.S1_at1/114+10003915..10005892transposon protein, putative, Mutator sub-class
LOC_Os04g18150NANA4+10008125..10008808transposon protein, putative, Mutator sub-class
LOC_Os04g18160OsAffx.22947.2.S1_x_at5/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.1.S1_x_at4/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.5.S1_x_at3/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.3.S1_x_at1/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18170Os.54151.1.S1_x_at4/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18170Os.48015.1.A1_x_at2/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18180OsAffx.31757.1.S1_at3/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18180OsAffx.31757.2.S1_at2/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18190OsAffx.26058.1.S1_at11/114+10030787..10031582Zinc knuckle family protein
LOC_Os04g18200Os.13550.1.S1_at11/114+10037029..10040474Dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
LOC_Os04g18220OsAffx.26059.1.S1_at11/114+10042568..10043041hypothetical protein
LOC_Os04g18230NANA4+10054327..10055040retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26058.1.S1_at--634--5051Chr04:10030843..10030867 (25 bp)
GCAGCAATTCCTGTTAAGTTGTAGC
LOC_Os04g18190
OsAffx.26058.1.S1_at--1035--6612Chr04:10030860..10031096 (25 bp)
GTTGTAGCACCTTGGGAAAGGCTGC
LOC_Os04g18190
OsAffx.26058.1.S1_at--457--6551Chr04:10031166..10031190 (25 bp)
GATTAACAACGGATTAACACTCTCG
LOC_Os04g18190
OsAffx.26058.1.S1_at--531--131Chr04:10031178..10031202 (25 bp)
ATTAACACTCTCGTCCTGGGATCAA
LOC_Os04g18190
OsAffx.26058.1.S1_at--919--5871Chr04:10031292..10031316 (25 bp)
GAGCGAGAAACAACATAAACCCGTC
LOC_Os04g18190
OsAffx.26058.1.S1_at--447--9832Chr04:10031307..10031372 (25 bp)
TAAACCCGTCAATGCGTTGGATCTC
LOC_Os04g18190
OsAffx.26058.1.S1_at--43--4253Chr08:12791138..12791203 (25 bp)
CCGTCAATGCGTTGGATCTCCTTAT
LOC_Os08g21470
OsAffx.26058.1.S1_at--422--1031Chr04:10031452..10031476 (25 bp)
AGGTCTGTGGCAATGACGGCCACTT
LOC_Os04g18190
OsAffx.26058.1.S1_at--297--5731Chr04:10031466..10031490 (25 bp)
GACGGCCACTTTGGGACGAATTGTC
LOC_Os04g18190
OsAffx.26058.1.S1_at--782--5191Chr04:10031483..10031507 (25 bp)
GAATTGTCCAAAAACCTGTGAGAAT
LOC_Os04g18190
OsAffx.26058.1.S1_at--812--5951Chr04:10031502..10031526 (25 bp)
GAGAATGTCAAAGCTCACGAACAAC
LOC_Os04g18190
Target Sequence 
GCAGCAATTCCTGTTAAGTTGTAGCACCTTGGGAAAGGCTGCAGGAATGCGTCACCGCCCGTCCTCATCATGGGATGGAC
GAGTGGCTCATCCTGCAGAATTTCTTCAACGGATTAACAACGGATTAACACTCTCGTCCTGGGATCAACTGGACGCTGCT
GCTGGAGGAGCACCCTTCTCAAAGATGGTCAGAGATACCACTGATCTGATTGAGAAGAGGCTCTCAAATATGGGTTGGAG
CGAGAAACAACATAAACCCGTCAATGCGTTGGATCTCCTTATGAAGAGACTGGACAACAATGAGAAGGACGCCAAGCAGG
GTACCATTAAGGCCCTGGGCTCTCACATGGCATGTGAGGTCTGTGGCAATGACGGCCACTTTGGGACGAATTGTCCAAAA
ACCTGTGAGAATGTCAAAGCTCACGAACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis