Browse Element(s) Details


OsAffx.31757.2.S1_at

Description tigr:9640.m01560
TID=OsAffx.31757.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1602011/11hypothetical protein
LOC_Os04g181802/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15980Os.43203.1.S1_x_at5/1112+9101375..9104610hypothetical protein
LOC_Os12g15990OsAffx.22896.1.S1_x_at1/1112+9107283..9108870retrotransposon protein, putative, unclassified
LOC_Os12g16000OsAffx.9815.1.S1_at11/1112+9111404..9116943transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16010OsAffx.31756.4.S1_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.5037.1.S1_s_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.4.S1_x_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.52455.1.S1_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.5.S1_x_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16020OsAffx.31757.2.S1_at11/1112+9125043..9125719hypothetical protein
LOC_Os12g16020OsAffx.31757.1.S1_at1/1112+9125043..9125719hypothetical protein
LOC_Os12g16030Os.45173.1.S1_x_at1/1112+9129718..9133627retrotransposon protein, putative, unclassified
LOC_Os12g16040Os.45173.1.S1_x_at2/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16040OsAffx.20877.1.S1_at1/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16050NANA12+9138936..9143264retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31757.2.S1_at--1073--7571Chr12:9125132..9125156 (25 bp)
GGGCTCGCCAGAGGTTCACGAACTT
LOC_Os12g16020
OsAffx.31757.2.S1_at--456--7151Chr12:9125164..9125184 (21 bp)
GTCTCCGAGTACAGATCCGGTTGTC
LOC_Os12g16020
OsAffx.31757.2.S1_at--296--7931Chr12:9125244..9125268 (25 bp)
GGATTACGGATACGACAACGCTCTC
LOC_Os12g16020
OsAffx.31757.2.S1_at--819--9991Chr12:9125281..9125305 (25 bp)
TAGCGCTGTGCAGAGTGCTCGTAAC
LOC_Os12g16020
OsAffx.31757.2.S1_at--304--4813Chr12:9125297..9125321 (25 bp)
GCTCGTAACTACAGGCAGGCATCAT
LOC_Os12g16020
OsAffx.31757.2.S1_at--75--651Chr12:9125351..9125375 (25 bp)
ATGCAGTTGTCTGAGTCCCATGACG
LOC_Os12g16020
OsAffx.31757.2.S1_at--602--9532Chr12:9125454..9125478 (25 bp)
TCTACAAGCCCGTCCAGAGGAAGAG
LOC_Os12g16020
OsAffx.31757.2.S1_at--336--1811Chr12:9125578..9125602 (25 bp)
ACCCGCAATGACAAGCCGTATGGCC
LOC_Os12g16020
OsAffx.31757.2.S1_at--711--7951Chr12:9125607..9125631 (25 bp)
GGATCAGACATGCTACAAGTGTGGC
LOC_Os12g16020
OsAffx.31757.2.S1_at--563--4391Chr12:9125639..9125663 (25 bp)
GCCACTAGGGCCGTATTTGCGAGGA
LOC_Os12g16020
OsAffx.31757.2.S1_at--916--6871Chr12:9125651..9125675 (25 bp)
GTATTTGCGAGGAGCCCCAACACGT
LOC_Os12g16020
Target Sequence 
GGGCTCGCCAGAGGTTCACGAACTTCAAGAGCGTCTCCGAGTACAGATCCGGTTGTCACGGATTACGGATACGACAACGC
TCTCCATCTTCCACCCTAGCGCTGTGCAGAGTGCTCGTAACTACAGGCAGGCATCATACAAGGAGTATGACGAGATGATC
GACATCATGCAGTTGTCTGAGTCCCATGACGAGGTTCTCCGCAAGAATTTTGTCTCCCAGCCGCCTGGCATGAGTGTTGG
CCTTGATGTCAATGTTATCAGTTATAAGGTCTACAAGCCCGTCCAGAGGAAGAGGGGCAAGCGTGGTGGGAAGAAGGCAG
TCGAGAAGTCAGAGAGAAAAGCTCCAGCTGCCCAGGGAGCACAGGGAGGCAAGGGCAAGAAGGAAGCCAAGCCACCCGCA
ATGACAAGCCGTATGGCCAGCAGGATCAGACATGCTACAAGTGTGGCATTTGGGGCCACTAGGGCCGTATTTGCGAGGAG
CCCCAACACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31757.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis