Browse Element(s) Details


OsAffx.31756.4.S1_x_at

Description tigr:9640.m01559
TID=OsAffx.31756.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1601011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15960OsAffx.19699.1.S1_at11/1112+9095141..9097127hypothetical protein
LOC_Os12g15960OsAffx.25317.1.S1_at1/1112+9095141..9097127hypothetical protein
LOC_Os12g15980Os.43203.1.S1_x_at5/1112+9101375..9104610hypothetical protein
LOC_Os12g15990OsAffx.22896.1.S1_x_at1/1112+9107283..9108870retrotransposon protein, putative, unclassified
LOC_Os12g16000OsAffx.9815.1.S1_at11/1112+9111404..9116943transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16010OsAffx.31756.4.S1_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.5037.1.S1_s_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.4.S1_x_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.52455.1.S1_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.5.S1_x_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16020OsAffx.31757.2.S1_at11/1112+9125043..9125719hypothetical protein
LOC_Os12g16020OsAffx.31757.1.S1_at1/1112+9125043..9125719hypothetical protein
LOC_Os12g16030Os.45173.1.S1_x_at1/1112+9129718..9133627retrotransposon protein, putative, unclassified
LOC_Os12g16040Os.45173.1.S1_x_at2/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16040OsAffx.20877.1.S1_at1/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16050NANA12+9138936..9143264retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31756.4.S1_x_at--575--2951Chr12:9121990..9122014 (25 bp)
AAGGCCACCGTCATCGCTGTGGTGC
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--946--5771Chr12:9121904..9121928 (25 bp)
GACGAGGACGCCGATGATGCTGAAC
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--977--6291Chr12:9121892..9121916 (25 bp)
GATGATGCTGAACGAGATCCCGCGC
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--43--1651Chr12:9121807..9121831 (25 bp)
AGCGACGCCGTCAAGGTGCTCGAGC
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--868--3211Chr12:9121796..9121820 (25 bp)
CAAGGTGCTCGAGCCGGAGGATATC
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--272--4351Chr12:9121737..9121761 (25 bp)
CCAGGTACGTGAACGGGCACAACAT
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--593--5811Chr12:9121705..9121729 (25 bp)
GACGCCGGCTACTCGGTGCACAAAG
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--213--4491Chr12:9121667..9121691 (25 bp)
GCCGGCGCGTTGAACATGGCTAGTA
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--160--4993Chr08:15702531..15702686 (25 bp)
GCATGTATGCATGCATGTGCCTTTG
NONE
OsAffx.31756.4.S1_x_at--757--8691Chr12:9121616..9121640 (25 bp)
TGTGCCTTTGTCAGCGCCGTAATAA
LOC_Os12g16010
OsAffx.31756.4.S1_x_at--334--371Chr12:9121595..9121619 (25 bp)
ATAATTCTGTTATTGACGTTCTTGA
LOC_Os12g16010
Target Sequence 
AAGGCCACCGTCATCGCTGTGGTGCGCGCCATGGCGGAGCCGCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCC
GGGGGCGACGAGGACGCCGATGATGCTGAACGAGATCCCGCGCCTCGCCGTGGTGTCCCCGGGCCTGAGCGGGGAGCTGA
GGAGGATGGTGGAGGAGGGCGCCAGCGACGCCGTCAAGGTGCTCGAGCCGGAGGATATCGCGAGGGCGGCGGTGTACCTG
GCCTCCGACGAGGCCAGGTACGTGAACGGGCACAACATCGTCGTCGACGCCGGCTACTCGGTGCACAAAGGAGCGGAGAA
CTCGCCGGCGCGTTGAACATGGCTAGTAGCTGGTGCCATGCATGTATGCATGCATGTGCCTTTGTCAGCGCCGTAATAAT
TCTGTTATTGACGTTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31756.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis