Browse Element(s) Details


OsAffx.26043.1.S1_at

Description tigr:9632.m01462
TID=OsAffx.26043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1631411/11hypothetical protein
LOC_Os11g224702/11hypothetical protein
LOC_Os08g214741/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16270OsAffx.31811.3.S1_x_at5/114+8820757..8822355Zinc knuckle family protein
LOC_Os04g16280OsAffx.15726.1.S1_at1/114+8825730..8827797transposon protein, putative, unclassified
LOC_Os04g16280OsAffx.29731.3.S1_at1/114+8825730..8827797transposon protein, putative, unclassified
LOC_Os04g16290NANA4+8830834..8831571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16300OsAffx.29731.1.S1_at2/114+8832745..8835260retrotransposon protein, putative, unclassified
LOC_Os04g16314OsAffx.26043.1.S1_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.26043.1.S1_x_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.13838.1.S1_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.5893.1.S1_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.17095.2.S1_x_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.16347.1.S1_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16330NANA4+8847214..8848073retrotransposon protein, putative, unclassified
LOC_Os04g16340NANA4+8857892..8859954retrotransposon protein, putative, unclassified
LOC_Os04g16350NANA4+8865704..8868808retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26043.1.S1_at--430--8931Chr04:8844544..8844568 (25 bp)
TGACGCCGGAGGATCGTTTTGGCCG
LOC_Os04g16314
OsAffx.26043.1.S1_at--997--6791Chr04:8844559..8844583 (25 bp)
GTTTTGGCCGGATGCTAGCAACGAC
LOC_Os04g16314
OsAffx.26043.1.S1_at--666--10231Chr04:8844561..8844585 (25 bp)
TTTGGCCGGATGCTAGCAACGACTG
LOC_Os04g16314
OsAffx.26043.1.S1_at--960--8451Chr04:8844563..8844587 (25 bp)
TGGCCGGATGCTAGCAACGACTGGT
LOC_Os04g16314
OsAffx.26043.1.S1_at--1076--3951Chr04:8844567..8844591 (25 bp)
CGGATGCTAGCAACGACTGGTGGCA
LOC_Os04g16314
OsAffx.26043.1.S1_at--1103--10011Chr04:8844574..8844598 (25 bp)
TAGCAACGACTGGTGGCATGAGCCG
LOC_Os04g16314
OsAffx.26043.1.S1_at--167--8491Chr04:8844587..8844611 (25 bp)
TGGCATGAGCCGGAAAGCTGCACTA
LOC_Os04g16314
OsAffx.26043.1.S1_at--290--1671Chr04:8844594..8844618 (25 bp)
AGCCGGAAAGCTGCACTAGGGATAC
LOC_Os04g16314
OsAffx.26043.1.S1_at--477--8151Chr04:8844598..8844622 (25 bp)
GGAAAGCTGCACTAGGGATACTCGT
LOC_Os04g16314
OsAffx.26043.1.S1_at--881--1592Chr04:8844602..8844626 (25 bp)
AGCTGCACTAGGGATACTCGTGCTC
LOC_Os04g16314
OsAffx.26043.1.S1_at--1033--9574Chr08:12794259..12794284 (25 bp)
TCTTGATGCATTGCTCAGTCTCCTC
LOC_Os08g21474
Target Sequence 
TGACGCCGGAGGATCGTTTTGGCCGGATGCTAGCAACGACTGGTGGCATGAGCCGGAAAGCTGCACTAGGGATACTCGTG
CTCCTTCAGTTCAAGTGGTCTACCTCCATCCTCTTGATGCATTGCTCAGTCTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis