Browse Element(s) Details


OsAffx.29731.1.S1_at

Description gb:NM_197042.1
DB_XREF= gi:37535443
TID=OsAffx.29731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0012L23.39), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3407811/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g163002/11retrotransposon protein, putative, unclassified
LOC_Os05g235002/11retrotransposon protein, putative, unclassified
LOC_Os01g358001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29731.1.S1_at--762--2572Chr10:17859345..17859369 (25 bp)
AACGGACAACGAAACCTGGATCATG
LOC_Os10g34078
OsAffx.29731.1.S1_at--85--7971Chr10:17859362..17859386 (25 bp)
GGATCATGGCATTTGACGGAGCACT
LOC_Os10g34078
OsAffx.29731.1.S1_at--1153--2911Chr10:17859395..17859419 (25 bp)
AAGGAGCAGGCACCGGCTTGACATC
LOC_Os10g34078
OsAffx.29731.1.S1_at--812--652Chr10:17859443..17859467 (25 bp)
ATGCAATCCATCTAAACTTCCGGGC
LOC_Os10g34078
OsAffx.29731.1.S1_at--771--5971Chr10:17859554..17859578 (25 bp)
GAGACTCTGAATTGGTCGCAAACCA
LOC_Os10g34078
OsAffx.29731.1.S1_at--749--6772Chr10:17859612..17859636 (25 bp)
GTTAGCCAAATATCTCGCCGAGGTT
LOC_Os10g34078
OsAffx.29731.1.S1_at--868--3532Chr10:17859663..17859687 (25 bp)
CATCGAAGTTCGACATGTCTACCGA
LOC_Os10g34078
OsAffx.29731.1.S1_at--531--5751Chr10:17859763..17859787 (25 bp)
GACGTTCTGACAAAACCATCCATCA
LOC_Os10g34078
OsAffx.29731.1.S1_at--519--572Chr10:17859780..17859804 (25 bp)
ATCCATCAAGGACACGCACGACGAA
LOC_Os10g34078
OsAffx.29731.1.S1_at--841--1691Chr10:17859813..17859837 (25 bp)
AGCCAATACCAGCATCTCGCAGGGA
LOC_Os10g34078
OsAffx.29731.1.S1_at--431--6151Chr10:17859844..17859868 (25 bp)
GAGGTCACAATTCACAAACGTCGTT
LOC_Os10g34078
Target Sequence 
AACGGACAACGAAACCTGGATCATGGCATTTGACGGAGCACTGAATAGCCAAGGAGCAGGCACCGGCTTGACATCCCCCA
CAGGAGATCAATTCAAGCATGCAATCCATCTAAACTTCCGGGCAACAAATAACACGGCCGAGTACGAAGGACTACTCGCA
GGGATAAAAGCAGCAGCCGCGCTTGGCGTCAAGCGACTAATCGTGAAGGGAGACTCTGAATTGGTCGCAAACCAAGTACA
CAAAGACTACAAATGCTCCAACCCCGAGTTAGCCAAATATCTCGCCGAGGTTAGAAAACTAGAACGCAAGTTCAACGACA
TCGAAGTTCGACATGTCTACCGAAAAGACAATGTCGAACCAGACGACCTTGCACGACGCGCTTCCAGGCGAGAACCACTC
GAGCCCGGAACGTTTTTGGACGTTCTGACAAAACCATCCATCAAGGACACGCACGACGAAAGCACCACAGCCAATACCAG
CATCTCGCAGGGAGCTGCAGAGGTCACAATTCACAAACGTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis