Browse Element(s) Details


OsAffx.20242.1.S1_x_at

Description gb:NM_197049.1
DB_XREF= gi:37535457
TID=OsAffx.20242.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative nodulin (OSJNBa0012L23.46), mRNA.
PROD=putative nodulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3415011/11nodulin, putative
LOC_Os10g341301/11nodulin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20242.1.S1_x_at--477--2951Chr10:17896598..17896622 (25 bp)
AAGGCCGAGCAGCTCAGCAAGGCCA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--305--1492Chr10:17896583..17896607 (25 bp)
AGCAAGGCCACCGTCCAGTACGAGA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--145--2611Chr10:17896163..17896187 (25 bp)
AACGCGGCGCTGTACAACAGGCAGA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--384--3951Chr10:17896078..17896102 (25 bp)
CGGACGCCATGTTCTTCGAGCAGAA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--946--2951Chr10:17895989..17896013 (25 bp)
AAGGCCAAGGTGGAGTACGTCACGT
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--366--6091Chr10:17895977..17896001 (25 bp)
GAGTACGTCACGTCCATGCTCCAGG
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--787--9271Chr10:17895928..17895952 (25 bp)
TCCGGGACTACCTCATGATCGACGG
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--298--531Chr10:17895911..17895935 (25 bp)
ATCGACGGCGGCATGTACCAGGAGA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--137--7391Chr10:17895863..17895887 (25 bp)
GTGAGCGGCATGCAGCCCAAGATCA
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--116--4391Chr10:17895847..17895871 (25 bp)
CCAAGATCAGCATCTGGAGCGGCGC
LOC_Os10g34150
OsAffx.20242.1.S1_x_at--666--7891Chr10:17895738..17895762 (25 bp)
GGTTCACGAGCAGACCGGCATGCAG
LOC_Os10g34150
Target Sequence 
AAGGCCGAGCAGCTCAGCAAGGCCACCGTCCAGTACGAGACACAGGTGCAAGAGTCGAACGCGGCGCTGTACAACAGGCA
GAAGGCGGCGGACGCGACGCTGTACGAGCAGGTGAAGTCGGCGGAGGCGCGCAAGGCGCAGGCGGACGCCATGTTCTTCG
AGCAGAAGCTGGCGGAGGACGCGAGGCTGTACGCGAAGCAGAAGGAGGCGGAGGCGCTGGCCATGGTGGGCAAGGCCAAG
GTGGAGTACGTCACGTCCATGCTCCAGGCGCTCGGCGGCGACTACGGCGCGCTCCGGGACTACCTCATGATCGACGGCGG
CATGTACCAGGAGATGGCGCGCGTCAACGCCAGCGCGGTGAGCGGCATGCAGCCCAAGATCAGCATCTGGAGCGGCGCGG
ACGGCGCCGCCGGCGAGGCCGGCGCCGGCGCGATGCAGCAGGTGGCCGGCGTGTACAAGATGCTGCCGCCGCTGCTGTCG
ACGGTTCACGAGCAGACCGGCATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20242.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis