Browse Element(s) Details


Os.21367.1.S1_at

Description gb:AK071332.1
DB_XREF= gi:32981355
TID=Os.21367.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0012L23.48), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089P20, full insert sequence.
FL= gb:AK071332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3417011/11Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21367.1.S1_at--606--10511Chr10:17902679..17902703 (25 bp)
TTCACCTCACCAGTATCATCAAATG
LOC_Os10g34170
Os.21367.1.S1_at--541--7031Chr10:17902490..17902514 (25 bp)
GTACAGTGTTGATTTCGGGCAGGAC
LOC_Os10g34170
Os.21367.1.S1_at--268--11Chr10:17902467..17902491 (25 bp)
ACAGGGAAACCCTCAAGTGGATCCT
LOC_Os10g34170
Os.21367.1.S1_at--356--6251Chr10:17902448..17902472 (25 bp)
GATCCTGAACTATTTGGACCCGACC
LOC_Os10g34170
Os.21367.1.S1_at--465--3291Chr10:17902424..17902448 (25 bp)
CAAAGCTGGGCTCTTGACACACCTC
LOC_Os10g34170
Os.21367.1.S1_at--748--7571Chr10:17902386..17902410 (25 bp)
GGGCGATCAACATCTCATATCTGAA
LOC_Os10g34170
Os.21367.1.S1_at--791--9431Chr10:17902367..17902391 (25 bp)
TCTGAACTACGATTGGTCCTTGAAT
LOC_Os10g34170
Os.21367.1.S1_at--12--4151Chr10:17902291..17902315 (25 bp)
CGCTGTCATGTGCTTTCTGTTTAAT
LOC_Os10g34170
Os.21367.1.S1_at--1131--1151Chr10:17902100..17902124 (25 bp)
AGTCATTTACTATTCCTTCTTTCTG
LOC_Os10g34170
Os.21367.1.S1_at--693--10671Chr10:17902088..17902112 (25 bp)
TTCCTTCTTTCTGTCTACCAAATTA
LOC_Os10g34170
Os.21367.1.S1_at--484--5591Chr10:17902059..17902083 (25 bp)
GAAATCTCATACGACTGATCTTGTA
LOC_Os10g34170
Target Sequence 
TTCACCTCACCAGTATCATCAAATGGTACAGTGTTGATTTCGGGCAGGACAGGGAAACCCTCAAGTGGATCCTGAACTAT
TTGGACCCGACCAAAGCTGGGCTCTTGACACACCTCCTCAACGACGGTGGGGCGATCAACATCTCATATCTGAACTACGA
TTGGTCCTTGAATGTTTGAGGAGAACTTGTAGTTGTAGTTGTAATGGCATAATACATTCAGAGCCGCTGTCATGTGCTTT
CTGTTTAATTGGCAAAATGGTCAATGGAAAGAAGAGCATTGAGCATAGAGGCAATCAGCATGTGGAGCTTGTTGCAAGAT
TTGAGTCTGAGGATGTATATAGTATTGTAAGCATGTCAAAGTGGGTTCACAGCATAGATGAAAAAGGGAATATGTTTGTG
AGGATAAAATGCATTAGTCATTTACTATTCCTTCTTTCTGTCTACCAAATTATACCGAAATCTCATACGACTGATCTTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis