Browse Element(s) Details


Os.7424.2.S1_a_at

Description gb:AK121674.1
DB_XREF= gi:37991297
TID=Os.7424.2
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OSJNBa0012L23.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068E07, full insert sequence.
FL= gb:AK121674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3418011/11Transcription factor BTF3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7424.2.S1_a_at--757--2631Chr10:17912204..17912228 (25 bp)
AAGACTACAACCACAGATGACAAAA
LOC_Os10g34180
Os.7424.2.S1_a_at--726--8951Chr10:17912187..17912211 (25 bp)
TGACAAAAGACTTCAGAGCACTCTG
LOC_Os10g34180
Os.7424.2.S1_a_at--281--6911Chr10:17912156..17912180 (25 bp)
GTAGGAGTAAACACCATCCCTGGCA
LOC_Os10g34180
Os.7424.2.S1_a_at--898--1711Chr10:17912144..17912168 (25 bp)
ACCATCCCTGGCATTGAAGAGGTTA
LOC_Os10g34180
Os.7424.2.S1_a_at--389--6831Chr10:17912003..17912115 (25 bp)
GTTTCTGAATCCTAAAGTGCAAGCT
LOC_Os10g34180
Os.7424.2.S1_a_at--67--2871Chr10:17911989..17912012 (24 bp)
AAGTGCAAGCTTCAATTGGTGCTAA
LOC_Os10g34180
Os.7424.2.S1_a_at--516--3171Chr10:17911976..17912000 (25 bp)
AATTGGTGCTAATACATGGGTTGTC
LOC_Os10g34180
Os.7424.2.S1_a_at--721--2111Chr10:17911963..17911987 (25 bp)
ACATGGGTTGTCAGTGGAACTCCAC
LOC_Os10g34180
Os.7424.2.S1_a_at--1159--7511Chr10:17911954..17911974 (21 bp)
GTGGAACTCCACAAACAAAGAAGCT
LOC_Os10g34180
Os.7424.2.S1_a_at--230--4771Chr10:17911654..17911678 (25 bp)
GCTGCAGGATCTGCTGCCATCAATT
LOC_Os10g34180
Os.7424.2.S1_a_at--21--4791Chr10:17911642..17911666 (25 bp)
GCTGCCATCAATTATCAACCAACTT
LOC_Os10g34180
Target Sequence 
AAGACTACAACCACAGATGACAAAAGACTTCAGAGCACTCTGAAAAGAGTAGGAGTAAACACCATCCCTGGCATTGAAGA
GGTTAACATTTTCAAGGATGATGTGGTTATTCAGTTTCTGAATCCTAAAGTGCAAGCTTCAATTGGTGCTAATACATGGG
TTGTCAGTGGAACTCCACAAACAAAGAAGCTGCAGGATCTGCTGCCATCAATTATCAACCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7424.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis