Browse Element(s) Details


Os.46662.1.S1_at

Description gb:AK120835.1
DB_XREF= gi:37990458
TID=Os.46662.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0012L23.52), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020I17, full insert sequence.
FL= gb:AK120835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46662.1.S1_at--416--8771Chr10:17932687..17932711 (25 bp)
TGTATCTTTGTTTTATGCAGCAACA
LOC_Os10g34220
Os.46662.1.S1_at--1147--9011Chr10:17932702..17932726 (25 bp)
TGCAGCAACAAGTGGATGTTTACTT
LOC_Os10g34220
Os.46662.1.S1_at--381--9851Chr10:17932749..17932773 (25 bp)
TAAATCATCTGAAATCTCTCTCTCT
LOC_Os10g34220
Os.46662.1.S1_at--512--3771Chr10:17932826..17932850 (25 bp)
CTCTCTCGTCCATGTAACTATGAGT
LOC_Os10g34220
Os.46662.1.S1_at--210--3971Chr10:17932832..17932856 (25 bp)
CGTCCATGTAACTATGAGTCCCATA
LOC_Os10g34220
Os.46662.1.S1_at--18--6111Chr10:17932847..17932871 (25 bp)
GAGTCCCATAGCATTTGTCCTTGTA
LOC_Os10g34220
Os.46662.1.S1_at--80--3591Chr10:17932858..17932882 (25 bp)
CATTTGTCCTTGTAACTGTTCTCAG
LOC_Os10g34220
Os.46662.1.S1_at--72--6731Chr10:17932875..17932899 (25 bp)
GTTCTCAGACAAATCACTGCACTCC
LOC_Os10g34220
Os.46662.1.S1_at--312--5631Chr10:17932882..17932906 (25 bp)
GACAAATCACTGCACTCCTTGTATG
LOC_Os10g34220
Os.46662.1.S1_at--903--5091Chr10:17932893..17932917 (25 bp)
GCACTCCTTGTATGCTCGGATCATA
LOC_Os10g34220
Os.46662.1.S1_at--724--6911Chr10:17932902..17932926 (25 bp)
GTATGCTCGGATCATATTTGAGTGA
LOC_Os10g34220
Target Sequence 
TGTATCTTTGTTTTATGCAGCAACAAGTGGATGTTTACTTGTGAGCATAAACAAAAACAGTGTAAATCATCTGAAATCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGTAACTAT
GAGTCCCATAGCATTTGTCCTTGTAACTGTTCTCAGACAAATCACTGCACTCCTTGTATGCTCGGATCATATTTGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis