Browse Element(s) Details


Os.23628.1.A1_at

Description gb:AK071436.1
DB_XREF= gi:32981459
TID=Os.23628.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0012L23.51), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093J24, full insert sequence.
FL= gb:AK071436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3420010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23628.1.A1_at--503--9951Chr10:17915535..17915559 (25 bp)
TACGCCAAGTTTCACCGCAACATGT
LOC_Os10g34200
Os.23628.1.A1_at--536--3571Chr10:17915487..17915511 (25 bp)
CATATTTTTCGGTCCTCTGTTGAGT
LOC_Os10g34200
Os.23628.1.A1_at--1124--7911Chr10:17915433..17915457 (25 bp)
GGTTGTCCAGGATGCAAATCATGCA
LOC_Os10g34200
Os.23628.1.A1_at--832--5531Chr10:17915349..17915373 (25 bp)
GAAACACCTGAGCTGTGATGTTCAA
LOC_Os10g34200
Os.23628.1.A1_at--289--7931Chr10:17915159..17915183 (25 bp)
GGATTATGTTTATAGTGGCCTTTTC
LOC_Os10g34200
Os.23628.1.A1_at--668--10551Chr10:17915131..17915155 (25 bp)
TTCTTTTGGTGAGTTAGCTGGTTTC
LOC_Os10g34200
Os.23628.1.A1_at--1040--1611Chr10:17915116..17915140 (25 bp)
AGCTGGTTTCAGGAGTGTACATCAC
LOC_Os10g34200
Os.23628.1.A1_at--1113--7033Chr10:17915089..17915113 (25 bp)
GTAAATATATCTATCCCACAGCGTT
LOC_Os10g34200
Os.23628.1.A1_at--727--3291Chr10:17915073..17915097 (25 bp)
CACAGCGTTTTAGCTTACATGTAAC
LOC_Os10g34200
Os.23628.1.A1_at--843--7051Chr10:17915053..17915077 (25 bp)
GTAACTATATGCTTTGGCCTCACAT
LOC_Os10g34200
Os.23628.1.A1_at--798--6291Chr10:17915010..17915034 (25 bp)
GATGATGTAATAAGGCCGCCGCTTC
NONE
Target Sequence 
TACGCCAAGTTTCACCGCAACATGTGATGTTGCTCAGGATATGTTAAACATATTTTTCGGTCCTCTGTTGAGTAAATGTT
CAGGGTATGAAAAGAAACCAGAGGTTGTCCAGGATGCAAATCATGCAACAGAGAAGAAAGACCTGAGCTGTGATGTTCAA
AGGCAGGGGGAACATGCAACAGAGAAGAAACACCTGAGCTGTGATGTTCAAAGGCAGTAGGAGCATGCAACAGAGAAGAA
AGACCTGAGCTGTGATGTTCAAAGACAGGGGGAACTTGTGACGAAAAAGAAGNGCAGCTTGAAAGATAAGGTGGGCTTGT
TTTTTTGAGTAGAGCAAATCGAGTGTTTAGGCAGTAGAGTACAAATCCATTTACTAGGATTATGTTTATAGTGGCCTTTT
CTTTTTCTTTTGGTGAGTTAGCTGGTTTCAGGAGTGTACATCACCTGTAAATATATCTATCCCACAGCGTTTTAGCTTAC
ATGTAACTATATGCTTTGGCCTCACATATAATGAGGTGGTTTATTGATGATGTAATAAGGCCGCCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23628.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis