Browse Element(s) Details


OsAffx.18511.1.S1_at

Description gb:NM_197048.1
DB_XREF= gi:37535455
TID=OsAffx.18511.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012L23.45), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3414011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18511.1.S1_at--146--7311Chr10:17890019..17890043 (25 bp)
GTGCTGGCCTTTTCGGTGCAGAAGC
LOC_Os10g34140
OsAffx.18511.1.S1_at--979--8971Chr10:17890051..17890075 (25 bp)
TGAACTCCTAAATTTGGCCCTGCAA
LOC_Os10g34140
OsAffx.18511.1.S1_at--909--2711Chr10:17890163..17890187 (25 bp)
AAGCATCAACTGCTCCTAGGCGGTT
LOC_Os10g34140
OsAffx.18511.1.S1_at--303--6331Chr10:17890252..17890276 (25 bp)
GATGCAAGATGCTTTTCACGCCGAA
LOC_Os10g34140
OsAffx.18511.1.S1_at--277--10771Chr10:17890352..17890376 (25 bp)
TTGACGCTTATCCAGGCTCTGAGGG
LOC_Os10g34140
OsAffx.18511.1.S1_at--467--1431Chr10:17890378..17890402 (25 bp)
AGAAAACTTTCGCTATGCTCCTTTG
LOC_Os10g34140
OsAffx.18511.1.S1_at--310--5491Chr10:17890426..17890450 (25 bp)
GAACATTATCACTTCGTCCTTTGTA
LOC_Os10g34140
OsAffx.18511.1.S1_at--40--7271Chr10:17890441..17890465 (25 bp)
GTCCTTTGTATCTTGTCAGTTCAGT
LOC_Os10g34140
OsAffx.18511.1.S1_at--544--9651Chr10:17890461..17890485 (25 bp)
TCAGTTACTGTCCTCGCGAGTGTAA
LOC_Os10g34140
OsAffx.18511.1.S1_at--1061--6311Chr10:17890496..17890520 (25 bp)
GATGCAATCGCATCCATTGGTTGTA
LOC_Os10g34140
OsAffx.18511.1.S1_at--937--6411Chr10:17890538..17890562 (25 bp)
GATCTCGTCTGGGATGGTGTACCTC
LOC_Os10g34140
Target Sequence 
GTGCTGGCCTTTTCGGTGCAGAAGCAAGTCGATGAACTCCTAAATTTGGCCCTGCAACAGCGAAGGGAGCATAAAAATAG
AACAGTTAAGAAGTGGACACAACCTGCAGCTGAGGTGCTGAAGATCAATGTGGATGGAGCTTTCAAGCATCAACTGCTCC
TAGGCGGTTGGGGTTATGTAATCCGGGACGTGGGAGCACATGTGATACAGGCGGGAGCAGGAAGTTCATCGAGGATGCAA
GATGCTTTTCACGCCGAAGTTATGGCAGGAGTAAAGGGTTTACAGGCAGCGGCGAACCTGGGAATGGCCAATATCCAGCT
GGAATCCGACTCCTTGACGCTTATCCAGGCTCTGAGGGAAGAAAACTTTCGCTATGCTCCTTTGGGCGGCCTGCTGCTTG
AAGCGAAGAACATTATCACTTCGTCCTTTGTATCTTGTCAGTTCAGTTACTGTCCTCGCGAGTGTAATAAGGTAGCTGAT
GCAATCGCATCCATTGGTTGTAATAGTCCTCTAAACACTGATCTCGTCTGGGATGGTGTACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis