Browse Element(s) Details


OsAffx.20244.1.S1_at

Description tigr:9638.m02994
TID=OsAffx.20244.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3409011/11hypothetical protein
LOC_Os09g063901/11retrotransposon, putative, centromere-specific
LOC_Os02g260701/11hypothetical protein
LOC_Os12g222301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20244.1.S1_at--621--2393Chr12:12528671..12528694 (24 bp)
AAACTTTCTCCGTCTTGTATTGTGA
LOC_Os12g22230
OsAffx.20244.1.S1_at--472--2471Chr10:17867243..17867267 (25 bp)
AACACTTTTGTTGTCTTATGGGCAG
LOC_Os10g34090
OsAffx.20244.1.S1_at--172--10091Chr10:17867227..17867251 (25 bp)
TATGGGCAGAGCGACTTCCTTTACT
LOC_Os10g34090
OsAffx.20244.1.S1_at--1154--9231Chr10:17867211..17867235 (25 bp)
TCCTTTACTTCGCACCATTTGTTGA
LOC_Os10g34090
OsAffx.20244.1.S1_at--851--3571Chr10:17867196..17867220 (25 bp)
CATTTGTTGATTTGCCGCGTTTCTT
LOC_Os10g34090
OsAffx.20244.1.S1_at--841--10311Chr10:17867177..17867201 (25 bp)
TTTCTTTGTCTTTCGTAGCTGCGTA
LOC_Os10g34090
OsAffx.20244.1.S1_at--951--9291Chr10:17866917..17866941 (25 bp)
TCCCCTTTGTAGATCTCGACGACGT
LOC_Os10g34090
OsAffx.20244.1.S1_at--984--6151Chr10:17866774..17866798 (25 bp)
GAGGTTTGGCTGAACTCGTACCTTA
LOC_Os10g34090
OsAffx.20244.1.S1_at--904--872Chr09:3013859..3013883 (25 bp)
ATGGCCGACGTTTGTCGTCAGCTAA
LOC_Os09g06390
OsAffx.20244.1.S1_at--1121--3492Chr12:12529237..12529261 (25 bp)
CTAAAGGTTAATCGCGCGGAGCCCG
NONE
OsAffx.20244.1.S1_at--169--1951Chr10:17866678..17866702 (25 bp)
ACGGCGGGCTACTTGTCCTGGATGA
LOC_Os10g34090
Target Sequence 
AAACTTTCTCCGTCTTGTATTGTGATTTTTGTACAAACACTTTTGTTGTCTTATGGGCAGAGCGACTTCCTTTACTTCGC
ACCATTTGTTGATTTGCCGCGTTTCTTTGTCTTTCGTAGCTGCGTAGATTCTGAGGACGTCCAGCAAGGCGGATGTCCTG
ATGTCGCGAGGATCGACCTACCTTCCTCGAGCGATGCGCCTGCCCCTGCCATTGTTAACGATGGGGAGCATCCCTTACAT
CCTCTCCCCTTTGTAGATCTCGACGACGTCCTCGCTGAACGAGATAGGCGTATCGCGTACTGGAGGACGAAGTTCGAGGT
CGCCGAACTCGAGCGGTCGCTCGTGGTCGTGAAGAAGGACCAGGCCGTGGAGGCTCTCCGAGGCTGCGAGGTTTGGCTGA
ACTCGTACCTTAAGAGCTGCTACAGTGCCATGGCCGACGTTTGTCGTCAGCTAAAGGTTAATCGCGCGGAGCCCGAGGAG
AGTACGGCGGGCTACTTGTCCTGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis