Browse Element(s) Details


OsAffx.30663.1.S1_x_at

Description gb:NM_197039.1
DB_XREF= gi:37535437
TID=OsAffx.30663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012L23.40), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3405011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34020Os.39228.1.S1_at11/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34020Os.46635.1.S1_x_at1/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34030Os.46663.1.S1_x_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34030Os.50626.1.S1_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30663.1.S1_x_at--864--9731Chr10:17843935..17843959 (25 bp)
TCAATCGCAGCACTGGAGCCATCAA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--579--371Chr10:17843915..17843939 (25 bp)
ATCAACCTTCCATCAGGCATCGATT
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--361--511Chr10:17843897..17843921 (25 bp)
ATCGATTCCAACCAGATGACCACCA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--779--2731Chr10:17843800..17843824 (25 bp)
AAGAATGCCAGATCGCGTCGGTGCT
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--76--5391Chr10:17843616..17843640 (25 bp)
GAAGAAGATCGCCAAGACCGCCATA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--1068--4431Chr10:17843597..17843621 (25 bp)
GCCATATCAGGCGACCAGTGGGAGA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--780--8031Chr10:17843577..17843601 (25 bp)
GGAGAATTCGTTCCAAGACCCGACG
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--927--9831Chr10:17843539..17843563 (25 bp)
TAAAGCTGTTCCACTGGCTCAGGGA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--429--4471Chr10:17843340..17843364 (25 bp)
GCCTCCCGAGCAACATGATGTACTA
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--5--3531Chr10:17843327..17843351 (25 bp)
CATGATGTACTAGTGCACGACGAGC
LOC_Os10g34050
OsAffx.30663.1.S1_x_at--1049--9891Chr10:17843320..17843344 (25 bp)
TACTAGTGCACGACGAGCAGCAGAT
LOC_Os10g34050
Target Sequence 
TCAATCGCAGCACTGGAGCCATCAACCTTCCATCAGGCATCGATTCCAACCAGATGACCACCACCGAGGCCATCCTGGCG
TGGCACCTGGCGACGGAGCTGCTCGAGACGACGACGACGATGGACAAGCAGAAGAAAGAATGCCAGATCGCGTCGGTGCT
GTCCAAGCGGTGCGGCTGCCGCGCGTGCCCGCCGAGCCGCCGGTGCAGGAAGAAGAAGATCGCCAAGACCGCCATATCAG
GCGACCAGTGGGAGAATTCGTTCCAAGACCCGACGGTGCGGAGAGGTGTAAAGCTGTTCCACTGGCTCAGGGAGAAGCCC
GCCGACGAGGCGTGGGACGAGCTGGCGCGCCTCTGGGTGCACCTCGTCATCTACCTCGCGCCGTCCAACGACGTGCAGGG
CCATGCCAAGGCGTTGGCCTCATGGGGCGCCGACCTCATCACCTGCCTCTGGGCACTGTGCACGCACGCCGGGATCACGC
GCCAGCCGCCTCCCGAGCAACATGATGTACTAGTGCACGACGAGCAGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30663.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis