Browse Element(s) Details


OsAffx.29731.2.S1_at

Description tigr:9638.m02992
TID=OsAffx.29731.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative GAG-POL precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3406411/11hypothetical protein
LOC_Os05g235001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29731.2.S1_at--327--1071Chr10:17856087..17856111 (25 bp)
AGGGACGGCGACAACCGACGTGATC
LOC_Os10g34064
OsAffx.29731.2.S1_at--632--5971Chr10:17856164..17856188 (25 bp)
GAGAAGCCAAGCTCCTGAGCCAAGT
LOC_Os10g34064
OsAffx.29731.2.S1_at--475--10611Chr10:17856218..17856242 (25 bp)
TTCGGATCGGCCTCCAAGACGATGT
LOC_Os10g34064
OsAffx.29731.2.S1_at--392--1811Chr10:17856259..17856283 (25 bp)
ACCCTATCCCAGGAAACGGATGCAG
LOC_Os10g34064
OsAffx.29731.2.S1_at--976--3951Chr10:17856275..17856299 (25 bp)
CGGATGCAGGGCGTTCACACCAGCG
LOC_Os10g34064
OsAffx.29731.2.S1_at--6--1731Chr10:17856293..17856317 (25 bp)
ACCAGCGCTCCGCAATGTGCGATGG
LOC_Os10g34064
OsAffx.29731.2.S1_at--994--4051Chr10:17856320..17856344 (25 bp)
CGAGAAGTTCCTACCGGGATCGATT
LOC_Os10g34064
OsAffx.29731.2.S1_at--458--8511Chr10:17856327..17856351 (25 bp)
TTCCTACCGGGATCGATTGAGAAAT
LOC_Os10g34064
OsAffx.29731.2.S1_at--568--832Chr10:17856601..17856621 (21 bp)
ATGGAGAACCCGAGCGAGTCATTGC
LOC_Os10g34064
OsAffx.29731.2.S1_at--632--4671Chr10:17856620..17856644 (25 bp)
GCGGGACTATATTCGGCACTTTAAC
LOC_Os10g34064
OsAffx.29731.2.S1_at--624--4211Chr10:17856746..17856770 (25 bp)
CCGAATCACGTCTGCCCGAAAGCTA
LOC_Os10g34064
Target Sequence 
AGGGACGGCGACAACCGACGTGATCGAAACTCCCAATCTCCTTATCCGAGTCGAGATCGAGGACGCGATCATCGCTCGAG
AAGCCAAGCTCCTGAGCCAAGTGACCCCTCATCCTCGTCTTCGTCGTCCTCTTCGGATCGGCCTCCAAGACGATGTCGCG
ACCACGGGCCACACCCTATCCCAGGAAACGGATGCAGGGCGTTCACACCAGCGCTCCGCAATGTGCGATGGCCCGAGAAG
TTCCTACCGGGATCGATTGAGAAATATGATGGAGAACCCGAGCGAGTCATTGCGGGACTATATTCGGCACTTTAACAAGT
GCAAAAATACGATCCCCGAGATCACCGATGCTTCTGTCATCCGAGCATTCAGATCAGGCGTCCGAGATCGGTACACCACC
CAGGAGTTGGCGACGCGCCGAATCACGTCTGCCCGAAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29731.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis