Browse Element(s) Details


OsAffx.8016.1.S1_x_at

Description tigr:9638.m02996
TID=OsAffx.8016.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3411011/11hypothetical protein
LOC_Os10g340501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8016.1.S1_x_at--250--4911Chr10:17874220..17874244 (25 bp)
GCTTCTCGACAACGAACACGACGAC
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--59--1391Chr10:17874124..17874148 (25 bp)
AGACGACCGCAAGATCGCGTCGGTG
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--1150--511Chr10:17874111..17874135 (25 bp)
ATCGCGTCGGTGTTGTCGAGGTACT
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--1152--9911Chr10:17874090..17874114 (25 bp)
TACTGCATGTTCCTGGTGGCGCAGA
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--676--9271Chr10:17874080..17874104 (25 bp)
TCCTGGTGGCGCAGATCCCGGAGCT
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--1147--5711Chr10:17874048..17874072 (25 bp)
GACGACGAGACGTGGGTGTCCGACA
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--352--8711Chr10:17874032..17874056 (25 bp)
TGTCCGACAGGTACGGCGACACGGC
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--343--2931Chr10:17873949..17873973 (25 bp)
AAGGCGATAGCCGTGGCCGTCCGAT
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--625--951Chr10:17873912..17873936 (25 bp)
AGGAGCTGTTCGACGACGACCCGGC
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--278--8471Chr10:17873813..17873837 (25 bp)
TGGCGCGCTTCTGGGTGCACCTCGT
LOC_Os10g34110
OsAffx.8016.1.S1_x_at--11--9352Chr10:17873780..17873804 (25 bp)
TCGCGCCGTCCAACGACGTGCAGGG
LOC_Os10g34110
Target Sequence 
GCTTCTCGACAACGAACACGACGACCACCCTCCCCCCGCCGCCGACGAAAACGACGACGACCAGCAGCAGCAGAAGAAGA
AGAAGGAGAAGAAAGAAGACGACCGCAAGATCGCGTCGGTGTTGTCGAGGTACTGCATGTTCCTGGTGGCGCAGATCCCG
GAGCTGCTCCCCGACGACGAGACGTGGGTGTCCGACAGGTACGGCGACACGGCGAGCGCCCTGCACCTCGCGTCCAGGCG
GGTCGTCTGCCCGACGAGCCGGAGGAGGAAGAAGGCGATAGCCGTGGCCGTCCGATCGAGCCGGTGGGAGGAGCTGTTCG
ACGACGACCCGGCGGCGCGGCGCGGCGCCAGGCTGTTCCACCGGCTCCGGCGGCGGGGCCCGGCGTTCGACAAGGCGTGG
GACGAGCTGGCGCGCTTCTGGGTGCACCTCGTCGTCTACCTCGCGCCGTCCAACGACGTGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8016.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis