Browse Element(s) Details


OsAffx.5893.1.S1_at

Description tigr:9636.m02134
TID=OsAffx.5893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2184911/11hypothetical protein
LOC_Os04g163141/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein
LOC_Os08g21820OsAffx.29299.1.S1_at11/118+13018727..13019881hypothetical protein
LOC_Os08g21830OsAffx.29300.1.S1_at11/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_x_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21869OsAffx.5894.1.S1_at10/118+13057395..13059449hypothetical protein
LOC_Os08g21869Os.31535.1.A1_at1/118+13057395..13059449hypothetical protein
LOC_Os08g21880OsAffx.5895.1.S1_at11/118+13061539..13067290retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5893.1.S1_at--795--6191Chr08:13038931..13038955 (25 bp)
GAGGCAGGAAGAGCATATCAAAAAA
LOC_Os08g21849
OsAffx.5893.1.S1_at--277--5971Chr08:13039007..13039031 (25 bp)
GAGAACTAACAATTCCACTCCAAGT
LOC_Os08g21849
OsAffx.5893.1.S1_at--881--2871Chr08:13039028..13039052 (25 bp)
AAGTGGAGTTGCACCGTGATGTCCC
LOC_Os08g21849
OsAffx.5893.1.S1_at--809--3992Chr08:13039042..13039282 (25 bp)
CGTGATGTCCCACACAGTTCAAGTG
LOC_Os08g21849
OsAffx.5893.1.S1_at--225--571Chr08:13039293..13039317 (25 bp)
ATCCTCTCGGATGTGTCGCTCAGTC
LOC_Os08g21849
OsAffx.5893.1.S1_at--258--791Chr08:13039303..13039327 (25 bp)
ATGTGTCGCTCAGTCTCCTTTGGAG
LOC_Os08g21849
OsAffx.5893.1.S1_at--182--9371Chr08:13039332..13039356 (25 bp)
TCTAGGAGAACTCACCCGGAGGATC
LOC_Os08g21849
OsAffx.5893.1.S1_at--670--3351Chr08:13039344..13039368 (25 bp)
CACCCGGAGGATCGATGCACTTGAA
LOC_Os08g21849
OsAffx.5893.1.S1_at--889--511Chr08:13039354..13039378 (25 bp)
ATCGATGCACTTGAACTGCAAGCGG
LOC_Os08g21849
OsAffx.5893.1.S1_at--788--2131Chr08:13039413..13039437 (25 bp)
ACAGTCACGAGAGTGGCAGCAGTCT
LOC_Os08g21849
OsAffx.5893.1.S1_at--802--8851Chr08:13039440..13039464 (25 bp)
TGATGCACAGATCGCAAACTTCAAT
LOC_Os08g21849
Target Sequence 
GAGGCAGGAAGAGCATATCAAAAAATCACAAATGAGATTATGTTACCTAACCCGGAGTTTCATTTGTATAACTGCCGAGA
ACTAACAATTCCACTCCAAGTGGAGTTGCACCGTGATGTCCCACACAGTTCAAGTGGTCTACCTCCATCCTCTCGGATGT
GTCGCTCAGTCTCCTTTGGAGGGGATCTAGGAGAACTCACCCGGAGGATCGATGCACTTGAACTGCAAGCGGGGAACATC
CAGCACACCTTGGAGGATCATGTGGTACAGTCACGAGAGTGGCAGCAGTCTGTTGATGCACAGATCGCAAACTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis