Browse Element(s) Details


OsAffx.5894.1.S1_at

Description tigr:9636.m02136
TID=OsAffx.5894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2186910/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21869OsAffx.5894.1.S1_at10/118+13057395..13059449hypothetical protein
LOC_Os08g21869Os.31535.1.A1_at1/118+13057395..13059449hypothetical protein
LOC_Os08g21880OsAffx.5895.1.S1_at11/118+13061539..13067290retrotransposon, putative, centromere-specific
LOC_Os08g21890OsAffx.25476.2.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.8356.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890Os.50889.1.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.15695.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.20020.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21900OsAffx.17102.1.S1_at11/118+13079078..13080109hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5894.1.S1_at--915--4071NONE
CGACGGGACGAAATAGGGTTGATCT
NONE
OsAffx.5894.1.S1_at--717--4372Chr08:13059236..13059260 (25 bp)
CCAACAACAGCCGTTAGTGTCTAGT
LOC_Os08g21869
OsAffx.5894.1.S1_at--317--4511Chr08:13059245..13059269 (25 bp)
GCCGTTAGTGTCTAGTGCAGCTCAA
LOC_Os08g21869
OsAffx.5894.1.S1_at--165--9051Chr08:13059260..13059284 (25 bp)
TGCAGCTCAAGGTTTATCACTTCTT
LOC_Os08g21869
OsAffx.5894.1.S1_at--487--10551Chr08:13059280..13059304 (25 bp)
TTCTTCTGGACACTGATGCACCGGA
LOC_Os08g21869
OsAffx.5894.1.S1_at--115--8151Chr08:13059287..13059311 (25 bp)
GGACACTGATGCACCGGATTTTACA
LOC_Os08g21869
OsAffx.5894.1.S1_at--121--5091Chr08:13059297..13059321 (25 bp)
GCACCGGATTTTACAGGGAACACTA
LOC_Os08g21869
OsAffx.5894.1.S1_at--83--8171Chr08:13059313..13059337 (25 bp)
GGAACACTAAGCAGTTCAGGCTCGA
LOC_Os08g21869
OsAffx.5894.1.S1_at--1094--1211Chr08:13059325..13059349 (25 bp)
AGTTCAGGCTCGAACTTGGCTGGTT
LOC_Os08g21869
OsAffx.5894.1.S1_at--261--2071Chr08:13059338..13059362 (25 bp)
ACTTGGCTGGTTCCTACGGGAAGAT
LOC_Os08g21869
OsAffx.5894.1.S1_at--542--8191Chr08:13059356..13059380 (25 bp)
GGAAGATTTCCATGATCGAGTGGTA
LOC_Os08g21869
Target Sequence 
CGACGGGACGAAATAGGGTTGATCTGCATCGGCAAGATCAACAACCCACGGAGAGTTATCATCAACTCACCGAAAGATCG
GGCCAACAACAGCCGTTAGTGTCTAGTGCAGCTCAAGGTTTATCACTTCTTCTGGACACTGATGCACCGGATTTTACAGG
GAACACTAAGCAGTTCAGGCTCGAACTTGGCTGGTTCCTACGGGAAGATTTCCATGATCGAGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis