Browse Element(s) Details


Os.21077.1.S1_at

Description gb:AK073645.1
DB_XREF= gi:32983668
TID=Os.21077.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052F06, full insert sequence.
FL= gb:AK073645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2184011/11ribosomal protein L15 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21800NANA8+13006829..13010601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21804Os.52447.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804OsAffx.13218.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804Os.52447.1.S1_x_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein
LOC_Os08g21820OsAffx.29299.1.S1_at11/118+13018727..13019881hypothetical protein
LOC_Os08g21830OsAffx.29300.1.S1_at11/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_x_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21869OsAffx.5894.1.S1_at10/118+13057395..13059449hypothetical protein
LOC_Os08g21869Os.31535.1.A1_at1/118+13057395..13059449hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21077.1.S1_at--95--2291Chr08:13034184..13034205 (22 bp)
AAATGGCCAATCCACCTTGAGGTAT
LOC_Os08g21840
Os.21077.1.S1_at--864--2631Chr08:13035045..13035069 (25 bp)
AACCTTGGATTCAGGGCACTTCTCA
LOC_Os08g21840
Os.21077.1.S1_at--1130--10551Chr08:13035064..13035088 (25 bp)
TTCTCAAGCCCGAGTGGTTTGCAAA
LOC_Os08g21840
Os.21077.1.S1_at--375--2911Chr08:13035141..13035165 (25 bp)
AAGGTTGATAGCATTGGCCGCCTGC
LOC_Os08g21840
Os.21077.1.S1_at--398--5411Chr08:13035225..13035249 (25 bp)
GAAGCTGCTCGAGTGATTGCGTAGA
LOC_Os08g21840
Os.21077.1.S1_at--326--671Chr08:13035257..13035281 (25 bp)
ATGAAGATGCTCCTCTGAACTAGAG
LOC_Os08g21840
Os.21077.1.S1_at--145--7911Chr08:13035326..13035350 (25 bp)
GGATCCCTTGGTAGCAAGTTCGGTA
LOC_Os08g21840
Os.21077.1.S1_at--1064--6911Chr08:13035373..13035397 (25 bp)
GTATGTCATTTTTCTTTACCCGTAG
LOC_Os08g21840
Os.21077.1.S1_at--77--5111Chr08:13035425..13035449 (25 bp)
GCACTGCTATACCTCTTGATCTAAA
LOC_Os08g21840
Os.21077.1.S1_at--209--9711Chr08:13035452..13035476 (25 bp)
TCAAAGATGCTCGTGTCGCGGTCAA
LOC_Os08g21840
Os.21077.1.S1_at--520--4671Chr08:13035469..13035493 (25 bp)
GCGGTCAACAACTGCTGTGAGTCCA
LOC_Os08g21840
Target Sequence 
AAATGGCCAATCCACCTTGAGGTATCAAGGACAACTGCTAGGGCAAAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAG
ACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTA
AAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTTCCC
TTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTC
CTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAAGGATCCCTTGGTAGCAAGTTCGG
TATGTTTGCTTGTCATTTAGACCAGTATGTCATTTTTCTTTACCCGTAGTCACATCACCAACACGTGAGCCGGACAGCAC
TGCTATACCTCTTGATCTAAAACTCAAAGATGCTCGTGTCGCGGTCAACAACTGCTGTGAGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis