Browse Element(s) Details


OsAffx.29299.1.S1_at

Description tigr:9636.m02131
TID=OsAffx.29299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2182011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21770NANA8+12994697..12998846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21780NANA8+12999660..13001544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21790NANA8+13003127..13006000hypothetical protein
LOC_Os08g21800NANA8+13006829..13010601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21804Os.52447.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804OsAffx.13218.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804Os.52447.1.S1_x_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein
LOC_Os08g21820OsAffx.29299.1.S1_at11/118+13018727..13019881hypothetical protein
LOC_Os08g21830OsAffx.29300.1.S1_at11/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_x_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29299.1.S1_at--948--2671Chr08:13019280..13019304 (25 bp)
AAGCGTCGCCTAACGACACGGCTGA
LOC_Os08g21820
OsAffx.29299.1.S1_at--398--931Chr08:13019247..13019271 (25 bp)
AGGCAGCTCAGCCTGAACGAATTGT
LOC_Os08g21820
OsAffx.29299.1.S1_at--814--1191Chr08:13019214..13019238 (25 bp)
AGTATTGCGATGCAAGGCTGTTGTC
LOC_Os08g21820
OsAffx.29299.1.S1_at--876--4171Chr08:13019184..13019208 (25 bp)
CCCAGAGACACAAGAGGCCGTTAGT
LOC_Os08g21820
OsAffx.29299.1.S1_at--301--3451Chr08:13019152..13019176 (25 bp)
CAGTTTGCTCGTTTTCTTGAGGTGA
LOC_Os08g21820
OsAffx.29299.1.S1_at--286--831Chr08:13019059..13019083 (25 bp)
ATGGATAACCTCAACAACAAGACGC
LOC_Os08g21820
OsAffx.29299.1.S1_at--1111--3511Chr08:13018940..13018964 (25 bp)
CATGATCACTTGCTCAATTGGGACG
LOC_Os08g21820
OsAffx.29299.1.S1_at--551--5791Chr08:13018919..13018943 (25 bp)
GACGCAAAAGTTCGATCAGGCCCTC
LOC_Os08g21820
OsAffx.29299.1.S1_at--379--2651Chr08:13018884..13018908 (25 bp)
AAGCCAGCGTAAGCGTCATGACCAA
LOC_Os08g21820
OsAffx.29299.1.S1_at--311--1691Chr08:13018823..13018847 (25 bp)
ACCAATACCGATGCGTCTGCAACTA
LOC_Os08g21820
OsAffx.29299.1.S1_at--537--611Chr08:13018813..13018837 (25 bp)
ATGCGTCTGCAACTAGCCGATTCAT
LOC_Os08g21820
Target Sequence 
AAGCGTCGCCTAACGACACGGCTGAGATAGAGGAGGCAGCTCAGCCTGAACGAATTGTGCCGCAGGAGTATTGCGATGCA
AGGCTGTTGTCGTTCCCCCAGAGACACAAGAGGCCGTTAGTGGACGAGCAGTTTGCTCGTTTTCTTGAGGTGATCCAAAA
GATCCACATACACGTGCCACTGCTGGATGCCATGCAAGTACCCACCTATGCACGGTATCTCATGGATAACCTCAACAACA
AGACGCCACTACCCACAACTGAGGTGGTCAAGCTGACGGAAGAGTTCAGTAATGCTATACTCCACAAGCTCCCGGAAAAG
AAGAAGGATCCAAGGTGTCCCATGATCACTTGCTCAATTGGGACGCAAAAGTTCGATCAGGCCCTCTGCGACCTTGAAGC
CAGCGTAAGCGTCATGACCAAGGAGGTCATCGACAAGCTCAACTTCACGGTGTTGGCACCAATACCGATGCGTCTGCAAC
TAGCCGATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis