Browse Element(s) Details


OsAffx.13218.1.S1_at

Description tigr:9631.m03615
TID=OsAffx.13218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g377003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g373771/11retrotransposon, putative, centromere-specific
LOC_Os04g057901/11retrotransposon, putative, centromere-specific
LOC_Os05g209701/11retrotransposon, putative, centromere-specific
LOC_Os08g218041/11retrotransposon, putative, centromere-specific
LOC_Os02g257601/11retrotransposon, putative, centromere-specific
LOC_Os02g272701/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37650OsAffx.30842.1.S1_at1/113+20836249..20841219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37670OsAffx.25403.1.S1_at11/113+20846134..20849684SRF-type transcription factor family protein
LOC_Os03g37680OsAffx.7616.1.S1_at1/113+20852148..20854259hypothetical protein
LOC_Os03g37690OsAffx.13217.2.S1_at11/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.10731.1.A1_a_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690OsAffx.13217.1.S1_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.38764.1.S1_x_at1/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37700OsAffx.13218.1.S1_at3/113+20861486..20863158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37710OsAffx.13219.1.S1_at6/113+20863959..20865665hypothetical protein
LOC_Os03g37720NANA3+20868240..20872040NB-ARC domain containing protein
LOC_Os03g37730NANA3+20878574..20879040hypothetical protein
LOC_Os03g37736Os.26886.2.S1_s_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736OsAffx.16467.1.S1_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736Os.26886.6.S1_s_at4/113+20880757..20881960hypothetical protein
LOC_Os03g37742NANA3+20882156..20883334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.3.S1_x_at7/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.1.S1_x_at6/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13218.1.S1_at--808--6471Chr03:20862711..20862735 (25 bp)
GATACATCCACGCTAACACAAGTCC
LOC_Os03g37700
OsAffx.13218.1.S1_at--1093--1211Chr03:20862737..20862761 (25 bp)
AGTTCATGGTCCTATTATCCGTGCT
LOC_Os03g37700
OsAffx.13218.1.S1_at--967--4131Chr03:20863094..20863118 (25 bp)
CGCGTCACCTTATTTGGGTCCAATG
LOC_Os03g37700
OsAffx.13218.1.S1_at--230--10851Chr03:20863107..20863292 (25 bp)
TTGGGTCCAATGTGCTATCACCGGT
NONE
OsAffx.13218.1.S1_at--1051--101118Chr10:7554180..7554199 (20 bp)
TATCACCGGTTTGCTCGTTACGGAA
NONE
OsAffx.13218.1.S1_at--210--6771Chr03:20863299..20863323 (25 bp)
GTTACGGAAACCCACCTGTGATATT
NONE
OsAffx.13218.1.S1_at--1088--1231Chr03:20863362..20863386 (25 bp)
AGTTGCTTGTTCTTGATAGTTCTCA
NONE
OsAffx.13218.1.S1_at--736--2251Chr03:20863402..20863426 (25 bp)
AAATACCCTCATGGTTGGACTGACC
NONE
OsAffx.13218.1.S1_at--1152--8111Chr03:20863418..20863442 (25 bp)
GGACTGACCATGCATCTGTCAAGAT
NONE
OsAffx.13218.1.S1_at--1161--3211Chr03:20863437..20863461 (25 bp)
CAAGATTCACGATTGCCTCTGGAGT
NONE
OsAffx.13218.1.S1_at--268--1251Chr03:20863504..20863528 (25 bp)
AGTTGGATCGCCAACGTTGCTCCAT
NONE
Target Sequence 
GATACATCCACGCTAACACAAGTCCAAGTTCATGGTCCTATTATCCGTGCTCGCGCACGTCAACTCAACTATCAGATACC
TTTTTCTGTCCATGGTGCCGCGTCACCTTATTTGGGTCCAATGTGCTATCACCGGTTTGCTCGTTACGGAAACCCACCTG
TGATATTTTTGTTGATTCAATCTTACATCTTTAATTTGCCAATTGAGTTGCTTGTTCTTGATAGTTCTCAATTGCTTGCA
AGAACAAATACCCTCATGGTTGGACTGACCATGCATCTGTCAAGATTCACGATTGCCTCTGGAGTTGGTGTAACGATTGC
TAAGGCACAACATCCTTGGATAGTTGTAGTTGGATCGCCAACGTTGCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis