Browse Element(s) Details


OsAffx.13219.1.S1_at

Description tigr:9631.m03616
TID=OsAffx.13219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g377106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37650OsAffx.30842.1.S1_at1/113+20836249..20841219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37670OsAffx.25403.1.S1_at11/113+20846134..20849684SRF-type transcription factor family protein
LOC_Os03g37680OsAffx.7616.1.S1_at1/113+20852148..20854259hypothetical protein
LOC_Os03g37690OsAffx.13217.2.S1_at11/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.10731.1.A1_a_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690OsAffx.13217.1.S1_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.38764.1.S1_x_at1/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37700OsAffx.13218.1.S1_at3/113+20861486..20863158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37710OsAffx.13219.1.S1_at6/113+20863959..20865665hypothetical protein
LOC_Os03g37720NANA3+20868240..20872040NB-ARC domain containing protein
LOC_Os03g37730NANA3+20878574..20879040hypothetical protein
LOC_Os03g37736Os.26886.2.S1_s_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736OsAffx.16467.1.S1_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736Os.26886.6.S1_s_at4/113+20880757..20881960hypothetical protein
LOC_Os03g37742NANA3+20882156..20883334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.3.S1_x_at7/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.1.S1_x_at6/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13219.1.S1_at--548--5651Chr03:20867207..20867231 (25 bp)
GACAGGTGGAGATTGCTTGCGTACA
NONE
OsAffx.13219.1.S1_at--537--71Chr03:20867196..20867220 (25 bp)
ATTGCTTGCGTACAGGCGGATCTTC
NONE
OsAffx.13219.1.S1_at--660--4131Chr03:20867155..20867179 (25 bp)
CGCTCGGTCGCGATTGGATCGTCAG
NONE
OsAffx.13219.1.S1_at--209--4971NONE
GCATCAGACGGCAGCTGCGCAGTGA
NONE
OsAffx.13219.1.S1_at--176--7231Chr03:20865528..20865552 (25 bp)
GTCCGTCGACACGTTAGGCCAAAGG
LOC_Os03g37710
OsAffx.13219.1.S1_at--764--4371NONE
CCAAAGGCCATGGTTTCTCTTGACA
NONE
OsAffx.13219.1.S1_at--212--1031Chr03:20864535..20864559 (25 bp)
AGGTCAGTGCGCCTGTAACTGTTAT
LOC_Os03g37710
OsAffx.13219.1.S1_at--450--8191Chr03:20864508..20864532 (25 bp)
GGAAGTCATCACAGACGTCCACATG
LOC_Os03g37710
OsAffx.13219.1.S1_at--505--5851Chr03:20864466..20864490 (25 bp)
GAGCCATAGGTGGTTCGGCTGACCC
LOC_Os03g37710
OsAffx.13219.1.S1_at--996--10511Chr03:20864101..20864439 (25 bp)
TTCACCAGAGGCTGTCAGGCATGCA
LOC_Os03g37710
OsAffx.13219.1.S1_at--665--8611Chr03:20864047..20864071 (25 bp)
TGGTGATCACGTTCCGAGGGCTCAA
LOC_Os03g37710
Target Sequence 
GACAGGTGGAGATTGCTTGCGTACAGGCGGATCTTCCGCTGCTCAAGTGCCTCGCTCGGTCGCGATTGGATCGTCAGGGT
AGCAGACGGCATGGCGGCATCAGACGGCAGCTGCGCAGTGATGGCGGCTGGGCTTGGGCCCGGTCAGAGATGGAGGACGA
CCCAGGTGGGCCAACCGGAGGAGGCGCACCGGCATGTGGTGGAGGCCGGCGTGGCGGCGGCGGAGGTGAGGAAGTCCGTC
GACACGTTAGGCCAAAGGCCATGGTTTCTCTTGACAATGGCAGTTATAAGGCGGTTGTGGAGGTCAGTGCGCCTGTAACT
GTTATTGGGAAGTCATCACAGACGTCCACATGTAAGGTGGCGATGAGAGGAGCCATAGGTGGTTCGGCTGACCCCTCGTC
CCCACCTCTTGCCACCGCCTTTCACCAGAGGCTGTCAGGCATGCAGGAGGAGGTGGCAGAGGCGTACAACATCATGGTGA
TCACGTTCCGAGGGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis