Browse Element(s) Details


OsAffx.13217.1.S1_at

Description tigr:9639.m02116
TID=OsAffx.13217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2403011/11retrotransposon protein, putative, unclassified
LOC_Os03g376907/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24000OsAffx.22385.1.S1_x_at9/1111+13098227..13102536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24000OsAffx.20329.1.S1_at1/1111+13098227..13102536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24006NANA11+13105606..13107484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24012NANA11+13108461..13112320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24020NANA11+13117964..13118788hypothetical protein
LOC_Os11g24030OsAffx.13217.1.S1_at11/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030OsAffx.13217.2.S1_at7/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030Os.10731.1.A1_a_at2/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030Os.38764.1.S1_x_at1/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24040NANA11+13125608..13126581hypothetical protein
LOC_Os11g24050Os.51314.1.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_s_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_x_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.2.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050OsAffx.8265.1.A1_x_at1/1111+13132079..13137123expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13217.1.S1_at--627--4312Chr03:20856593..20856617 (25 bp)
CCTTATCCCATTGCTCTTTGCAAAA
LOC_Os03g37690
OsAffx.13217.1.S1_at--1002--3271Chr11:13123617..13123641 (25 bp)
CAAAAGCTTTTCTCATCCTCCTTTC
LOC_Os11g24030
OsAffx.13217.1.S1_at--522--10612Chr03:20856635..20856659 (25 bp)
TTCCTCGTCTTTCAACTTGTTTTAG
LOC_Os03g37690
OsAffx.13217.1.S1_at--19--5256Chr09:3275085..3275105 (21 bp)
GAATCCCTACAAGGAGAGGTTCCAC
NONE
OsAffx.13217.1.S1_at--603--6151Chr11:13123370..13123394 (25 bp)
GAGGTTCCACCAAAGTACGCTAAAG
LOC_Os11g24030
OsAffx.13217.1.S1_at--803--2833Chr03:20856882..20856906 (25 bp)
AAGTATCTACTCATGTTGGAGACCA
LOC_Os03g37690
OsAffx.13217.1.S1_at--957--6612Chr03:20856896..20856920 (25 bp)
GTTGGAGACCAACTGCATTGCAAGA
LOC_Os03g37690
OsAffx.13217.1.S1_at--1052--3254Chr07:11752091..11752115 (25 bp)
CAACTGTTACTCTTGTTTCCGACAA
NONE
OsAffx.13217.1.S1_at--154--2934Chr09:3275367..3275391 (25 bp)
AAGGAAGATCTTCCCCAGCTATCAT
NONE
OsAffx.13217.1.S1_at--363--6152Chr03:20857505..20857529 (25 bp)
GAGGTGAAGCCTATTCATGTTGTCA
NONE
OsAffx.13217.1.S1_at--468--10532Chr03:20857518..20857542 (25 bp)
TTCATGTTGTCAAGTGTCCCTGCAC
NONE
Target Sequence 
CCTTATCCCATTGCTCTTTGCAAAAGCTTTTCTCATCCTCCTTTCCTCGTCTTTCAACTTGTTTTAGAGGAATCCCTACA
AGGAGAGGTTCCACCAAAGTACGCTAAAGTATCTACTCATGTTGGAGACCAACTGCATTGCAAGACAACTGTTACTCTTG
TTTCCGACAAGGAAGATCTTCCCCAGCTATCATTCAATGGAGAAGATAACCAAACGATTGTGCATATGACTACAATGTTG
GATGCTATTGATGACCTCCACACTAATTACAAGACTCAAGCCATAAATCAGAAGCATGTCCAACAGGAGAAAATTGCCAA
GCTACAGAAGACGGTTGAACAAATGGAAGATATGTCTCAACCTGAAGATAGTGACACCGCCAAGATGTTGAAATATACAG
AAGCTCATTTTGCCCAGTATCGCAAAGACACCAATCGTAAGCTCGTTCTTCACCAGAAGAGGATCTTCGAATTAGAAAAT
GAACCGTGGAAGTTGAATGTAGAACCTTCATCGGATGAAGAGGTGAAGCCTATTCATGTTGTCAAGTGTCCCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis