Browse Element(s) Details


Os.17435.1.S1_x_at

Description gb:AK066064.1
DB_XREF= gi:32976082
TID=Os.17435.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057A08, full insert sequence.
FL= gb:AK066064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2405011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24006NANA11+13105606..13107484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24012NANA11+13108461..13112320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24020NANA11+13117964..13118788hypothetical protein
LOC_Os11g24030OsAffx.13217.1.S1_at11/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030OsAffx.13217.2.S1_at7/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030Os.10731.1.A1_a_at2/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24030Os.38764.1.S1_x_at1/1111+13122686..13124240retrotransposon protein, putative, unclassified
LOC_Os11g24040NANA11+13125608..13126581hypothetical protein
LOC_Os11g24050Os.51314.1.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_s_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_x_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.2.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050OsAffx.8265.1.A1_x_at1/1111+13132079..13137123expressed protein
LOC_Os11g24060Os.10197.1.S1_at11/1111+13161298..13163220xanthine/uracil/vitamin C permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17435.1.S1_x_at--329--4991Chr11:13133234..13133258 (25 bp)
GCATGATGGAGCGATACCTTGAGAT
LOC_Os11g24050
Os.17435.1.S1_x_at--76--6011Chr11:13133174..13133198 (25 bp)
GAGAGAAGGTATGTTCACAAGCAAC
LOC_Os11g24050
Os.17435.1.S1_x_at--658--2871Chr11:13133136..13133160 (25 bp)
AAGTGTGTATTTATTGAGCTCAATG
LOC_Os11g24050
Os.17435.1.S1_x_at--599--5911Chr11:13133121..13133145 (25 bp)
GAGCTCAATGGATGTTACCAAACAA
LOC_Os11g24050
Os.17435.1.S1_x_at--758--991Chr11:13133086..13133110 (25 bp)
AGGATTATGCAGTTCTTAAGACCCC
LOC_Os11g24050
Os.17435.1.S1_x_at--335--3431Chr11:13133077..13133101 (25 bp)
CAGTTCTTAAGACCCCAGCAAATAG
LOC_Os11g24050
Os.17435.1.S1_x_at--1141--2831Chr11:13133050..13133074 (25 bp)
AAGTCTTTATGTGTGCTTGCGAAGA
LOC_Os11g24050
Os.17435.1.S1_x_at--798--10191Chr11:13132298..13132322 (25 bp)
TATTTGCTGCTCTGACAATATAGAA
LOC_Os11g24050
Os.17435.1.S1_x_at--615--4871Chr11:13132241..13132265 (25 bp)
GCTTTGGACTTATGCACTTTGGGTG
LOC_Os11g24050
Os.17435.1.S1_x_at--180--7971Chr11:13132197..13132221 (25 bp)
GGATCTAGTGACCATTTTCATGTTT
LOC_Os11g24050
Os.17435.1.S1_x_at--293--2111Chr11:13132170..13132194 (25 bp)
ACATGATATTAGCACTTTGGGTCTG
LOC_Os11g24050
Target Sequence 
GCATGATGGAGCGATACCTTGAGATGAGGAGTAAACAAGCCGAGGAAGAAGTTGCAGCTAGAGAGAAGGTATGTTCACAA
GCAACAGATTATTTTGTCAAGTGTGTATTTATTGAGCTCAATGGATGTTACCAAACAAGAGAAGGCAAAGGATTATGCAG
TTCTTAAGACCCCAGCAAATAGAGAAGTCTTTATGTGTGCTTGCGAAGATGACTTAGAGTCTGCTTTAATTTAGCTGAGA
AGTGAAATGGCCTAGCATCACCAAAGTTGACACATTTGATGAAGGAAAACAATGGAAGTACATGGTCCAAGGTCGCCAGG
GTGACAGAATGGATCCAAGGTCAATACTCAAAGCTACTAGACTGCCATAGGAGAAGGACATGGTCTGAGTACAAGAGGAT
TTATTTGCTGCTCTGACAATATAGAATATTTATGTTTTCAAACTGGTTACAAAATTATGCTTTGGACTTATGCACTTTGG
GTGTAATTGTAATTTATTTTTTGGATCTAGTGACCATTTTCATGTTTAAACATGATATTAGCACTTTGGGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17435.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis