Browse Element(s) Details


OsAffx.8265.1.A1_x_at

Description gb:NM_195842.1
DB_XREF= gi:37533043
TID=OsAffx.8265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1930011/11expressed protein
LOC_Os06g444501/11CONSTANS-like protein CO6, putative, expressed
LOC_Os11g240501/11expressed protein
LOC_Os02g530801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8265.1.A1_x_at--506--7834Chr10:9499583..9499607 (25 bp)
GGTAACGCATCACCGTCGTCTTCCT
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--299--9411Chr10:9499598..9499622 (25 bp)
TCGTCTTCCTTTGTTCCTGCTAGGG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--590--9231Chr10:9499604..9499628 (25 bp)
TCCTTTGTTCCTGCTAGGGTTCTTG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--766--3831Chr10:9499614..9499638 (25 bp)
CTGCTAGGGTTCTTGCGGCGGATTC
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--699--4571Chr10:9499752..9499776 (25 bp)
GCGCTGCTTCTTGATTTTCTTCGAT
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--170--8831Chr10:9499763..9499787 (25 bp)
TGATTTTCTTCGATTCGTGGTCCTG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--388--10631Chr10:9499771..9499795 (25 bp)
TTCGATTCGTGGTCCTGGCCGCCGG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--203--473Chr10:9499804..9499828 (25 bp)
ATCTCGATGTCGTCGTCGGTGGTCG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--100--4411Chr10:9499889..9499913 (25 bp)
GCCACAGCGCAGATGAGCAGCCTCG
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--197--6312Chr10:9499936..9499960 (25 bp)
GATGAGCACCGCCAGGAAGTAGTCC
LOC_Os10g19300
OsAffx.8265.1.A1_x_at--171--932Chr10:9499949..9499973 (25 bp)
AGGAAGTAGTCCAGCGCCGACCGGT
LOC_Os10g19300
Target Sequence 
GGTAACGCATCACCGTCGTCTTCCTTTGTTCCTGCTAGGGTTCTTGCGGCGGATTCGGCTGCTGGGGCCCTTCGTGGAGG
AGCTCCGGGAGCGGAGGGGGGAGGGGGAGGAGGAGGAGGAGGAGGAGCGGGCGCTACCGCCGCTCGCCGCCGCGCTCGAG
GCGGCGCTCGCGCTGCTTCTTGATTTTCTTCGATTCGTGGTCCTGGCCGCCGGCGCCCCGCATCTCGATGTCGTCGTCGG
TGGTCGTCGGGGGTCGGGCTATGGTGGTGGTGCGCCGCTCCGGCGACGTTGTGGACGAGGCAGCGGGCCACAGCGCAGAT
GAGCAGCCTCGCCGCGACGACGATGGCGACGACGATGAGCACCGCCAGGAAGTAGTCCAGCGCCGACCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8265.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis