Browse Element(s) Details


OsAffx.20503.1.S1_at

Description tigr:9638.m01617
TID=OsAffx.20503.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20503.1.S1_at--70--8271Chr10:9471915..9471939 (25 bp)
GGCAGCACCGGCATACATGATTCCG
LOC_Os10g19250
OsAffx.20503.1.S1_at--180--4971Chr10:9471906..9471929 (24 bp)
GCATACATGATTCCGGCGCTACTGA
LOC_Os10g19250
OsAffx.20503.1.S1_at--64--6591Chr10:9471812..9471921 (25 bp)
GATTCCGGCGCTACTGAAACGGACT
LOC_Os10g19250
OsAffx.20503.1.S1_at--1140--4551Chr10:9471805..9471914 (25 bp)
GCGCTACTGAAACGGACTCATTCTT
LOC_Os10g19250
OsAffx.20503.1.S1_at--474--2551Chr10:9471795..9471819 (25 bp)
AACGGACTCATTCTTCGCCTTGTTT
LOC_Os10g19250
OsAffx.20503.1.S1_at--1006--91Chr10:9471786..9471810 (25 bp)
ATTCTTCGCCTTGTTTGCCAATGAC
LOC_Os10g19250
OsAffx.20503.1.S1_at--14--4451Chr10:9471779..9471803 (25 bp)
GCCTTGTTTGCCAATGACACTTCTA
LOC_Os10g19250
OsAffx.20503.1.S1_at--791--8771Chr10:9471775..9471799 (25 bp)
TGTTTGCCAATGACACTTCTAGTGA
LOC_Os10g19250
OsAffx.20503.1.S1_at--1141--5611Chr10:9471764..9471788 (25 bp)
GACACTTCTAGTGAGGATGTGAATG
LOC_Os10g19250
OsAffx.20503.1.S1_at--44--771Chr10:9471748..9471772 (25 bp)
ATGTGAATGGTGTGGTGGCTAACCC
LOC_Os10g19250
OsAffx.20503.1.S1_at--1000--8652Chr02:18177154..18177187 (24 bp)
TGTGGTGGCTAACCCATTTGGCTCC
NONE
Target Sequence 
GGCAGCACCGGCATACATGATTCCGGCGCTACTGAAACGGACTCATTCTTCGCCTTGTTTGCCAATGACACTTCTAGTGA
GGATGTGAATGGTGTGGTGGCTAACCCATTTGGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis