Browse Element(s) Details


Os.46580.1.S1_at

Description gb:AK062808.1
DB_XREF= gi:32972826
TID=Os.46580.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015I18.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D08, full insert sequence.
FL= gb:AK062808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1920011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46580.1.S1_at--1102--1931Chr10:9452929..9452953 (25 bp)
ACGGCATCGAGACGCTGCAGCTCTA
LOC_Os10g19200
Os.46580.1.S1_at--979--9891Chr10:9452952..9452976 (25 bp)
TACTCCAGGGAGGTGAGCAACCGCC
LOC_Os10g19200
Os.46580.1.S1_at--1019--4131Chr10:9453071..9453095 (25 bp)
CGCTCCGTCCATAGATGTGTTTGAT
LOC_Os10g19200
Os.46580.1.S1_at--620--6631Chr10:9453114..9453138 (25 bp)
GTTGTTTGGGATTATCTCAGAGGCT
LOC_Os10g19200
Os.46580.1.S1_at--694--10151Chr10:9453126..9453150 (25 bp)
TATCTCAGAGGCTTATTCTCTGGTG
LOC_Os10g19200
Os.46580.1.S1_at--701--10571Chr10:9453141..9453165 (25 bp)
TTCTCTGGTGTGTAGTAATTTGCTG
LOC_Os10g19200
Os.46580.1.S1_at--517--9751Chr10:9453156..9453180 (25 bp)
TAATTTGCTGGATTTCTACCTGATG
LOC_Os10g19200
Os.46580.1.S1_at--1124--3711Chr10:9453171..9453195 (25 bp)
CTACCTGATGTTCCACTTGAGTTGT
LOC_Os10g19200
Os.46580.1.S1_at--781--6051Chr10:9453189..9453213 (25 bp)
GAGTTGTGCAAGTAAATGCTTCCAA
LOC_Os10g19200
Os.46580.1.S1_at--778--631Chr10:9453204..9453228 (25 bp)
ATGCTTCCAATTTGTGATTCTGTAG
LOC_Os10g19200
Os.46580.1.S1_at--770--211Chr10:9453247..9453271 (25 bp)
ATTTGTCTGCAATTTGGTGATGACT
LOC_Os10g19200
Target Sequence 
ACGGCATCGAGACGCTGCAGCTCTACTCCAGGGAGGTGAGCAACCGCCTCCTCGCGTTCGTCAGGTCCCGCTCCTCCGCC
GCAGGCGCGCCCCCGGCCTCCGCGGCGGCCGGAGAGGTGGCCTGAGCTGCTCGCTCGGCCGCCGCTCCGTCCATAGATGT
GTTTGATTGATGCATTTTTGTTGATGTTGTTTGGGATTATCTCAGAGGCTTATTCTCTGGTGTGTAGTAATTTGCTGGAT
TTCTACCTGATGTTCCACTTGAGTTGTGCAAGTAAATGCTTCCAATTTGTGATTCTGTAGAAGGTAAAATTGGTTCCAAT
TTGTCTGCAATTTGGTGATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis