Browse Element(s) Details


Os.18752.2.S1_x_at

Description gb:NM_195830.1
DB_XREF= gi:37533019
TID=Os.18752.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18752 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DHHC-type zinc finger protein (OSJNBa0015I18.16), mRNA.
PROD=putative DHHC-type zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1918011/11zinc finger family protein, putative, expressed
LOC_Os10g406501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18752.2.S1_x_at--314--2831Chr10:9444314..9444338 (25 bp)
AAGTTCTTCAGCCAATCGCGAGACA
LOC_Os10g19180
Os.18752.2.S1_x_at--708--6132Chr10:9444377..9444401 (25 bp)
GAGGGCAGTTTCTACCTGAACTTTC
LOC_Os10g19180
Os.18752.2.S1_x_at--203--6191Chr10:9444417..9444441 (25 bp)
GAGGACATCTGATAGCTGCACCGAC
LOC_Os10g19180
Os.18752.2.S1_x_at--788--791Chr10:9444471..9444495 (25 bp)
ATGTGGCAGTTTAGCCCCATTGCAA
LOC_Os10g19180
Os.18752.2.S1_x_at--432--971Chr10:9444505..9444529 (25 bp)
AGGAGCGTTTTCCAACCAAGCATCG
LOC_Os10g19180
Os.18752.2.S1_x_at--437--1811Chr10:9444590..9444614 (25 bp)
ACCCATTCCGTGTTTCAATGTCAGG
LOC_Os10g19180
Os.18752.2.S1_x_at--741--1391Chr10:9444618..9444642 (25 bp)
AGACGAACTCCGCAGTTTCATGTCA
LOC_Os10g19180
Os.18752.2.S1_x_at--378--10311Chr10:9444633..9444657 (25 bp)
TTTCATGTCACTCGCAGCATCAGAA
LOC_Os10g19180
Os.18752.2.S1_x_at--115--2311Chr10:9444728..9444752 (25 bp)
AAAGTGATCGCATCCCGTCAAAGAT
LOC_Os10g19180
Os.18752.2.S1_x_at--744--2331Chr10:9444747..9444771 (25 bp)
AAAGATCGTGCACCGGTCGTCCAAT
LOC_Os10g19180
Os.18752.2.S1_x_at--925--1671Chr10:9444813..9444837 (25 bp)
AGCCGATCTGAACTTGCCAACATCT
LOC_Os10g19180
Target Sequence 
AAGTTCTTCAGCCAATCGCGAGACATGAAGATCCTAAACATGACAAGAGGCGACCCGACAAGAGAGGGCAGTTTCTACCT
GAACTTTCCGTCGATCACACTACGAGGACATCTGATAGCTGCACCGACAGCAACTGCAGCGACATGGACATGGAAACATG
TGGCAGTTTAGCCCCATTGCAACATGAAGCGAGGAGCGTTTTCCAACCAAGCATCGCATCGTCGATCAGAAACCTCACCT
CATCACCTCAGAGCAGCCTGGACTCACCTGATCTTCACCCATTCCGTGTTTCAATGTCAGGAGCAGACGAACTCCGCAGT
TTCATGTCACTCGCAGCATCAGAATCCACTGCTCCAAAAAGCATTGCACTTTCAAGGTCGACGAGTGGTGGGTACGAGGC
CTCGGGAGGCGAGGAAAGTGATCGCATCCCGTCAAAGATCGTGCACCGGTCGTCCAATTGGGCCAATGCCATCCTCAATT
CCGGTAGGCGAGAAATGGCAGCCGATCTGAACTTGCCAACATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18752.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis