Browse Element(s) Details


OsAffx.18298.1.S1_at

Description tigr:9638.m01608
TID=OsAffx.18298.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1916011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18298.1.S1_at--802--8931Chr10:9428380..9428404 (25 bp)
TGACTGCACATATTGGTGACTTCAG
LOC_Os10g19160
OsAffx.18298.1.S1_at--308--8251Chr10:9428475..9428499 (25 bp)
GGCACTATTGGGTACTTAGCACCAG
LOC_Os10g19160
OsAffx.18298.1.S1_at--820--7751Chr10:9428768..9428792 (25 bp)
GGTGACATATACAGCTACGGTGTTC
LOC_Os10g19160
OsAffx.18298.1.S1_at--813--4851Chr10:9428781..9428805 (25 bp)
GCTACGGTGTTCTACTGCTGGAAAT
LOC_Os10g19160
OsAffx.18298.1.S1_at--255--5371Chr10:9428817..9428841 (25 bp)
GAAGACCAACTGACACAATGTTTCA
LOC_Os10g19160
OsAffx.18298.1.S1_at--19--6931Chr10:9428863..9428887 (25 bp)
GTATGTTGAGATGGCCTATCCTGAT
LOC_Os10g19160
OsAffx.18298.1.S1_at--428--8151Chr10:9428905..9428929 (25 bp)
GGACAACGCAATACCACAGGACGGA
LOC_Os10g19160
OsAffx.18298.1.S1_at--502--6611Chr10:9428948..9428972 (25 bp)
GATTGGTTTATTGCTCCTATTTCAA
LOC_Os10g19160
OsAffx.18298.1.S1_at--278--6831Chr10:9428979..9429003 (25 bp)
GTTTAGCGTGTTGCAGGGACTCTGC
LOC_Os10g19160
OsAffx.18298.1.S1_at--732--6551Chr10:9429228..9429252 (25 bp)
GATTAACACGGCATCACTGTACATT
LOC_Os10g19160
OsAffx.18298.1.S1_at--247--5571Chr10:9429270..9429294 (25 bp)
GAAAGACGCATTGAGCATGCATGCA
LOC_Os10g19160
Target Sequence 
TGACTGCACATATTGGTGACTTCAGTTTAGCAAGAATAATGAGTGCAGAAGCAGAAGGCCAATGCTTGGGTGAGAGTAGC
TCAGTTGGAATTAAAGGCACTATTGGGTACTTAGCACCAGAATATGGCATGGGGACAGAAATTTCTAGAGAAGGTGACAT
ATACAGCTACGGTGTTCTACTGCTGGAAATGCTTACTGGTAGAAGACCAACTGACACAATGTTTCATGATGATATGAGTC
TTCCAAAGTATGTTGAGATGGCCTATCCTGATAATTTGTTGGAAATTATGGACAACGCAATACCACAGGACGGAAATTCT
CAAGATATTGTAGATTGGTTTATTGCTCCTATTTCAAGAATTGGTTTAGCGTGTTGCAGGGACTCTGCAAGTCAGAGAAT
GAGAATGAATGAGGTAGTGAAAGAATTGAGTGGCATAAAGGAGTCAGAAATGTGTGGTATGATTAACACGGCATCACTGT
ACATTACATGGCAGCAAGAAAGGAAAGACGCATTGAGCATGCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis