Browse Element(s) Details


OsAffx.14524.1.S1_at

Description gb:NM_195828.1
DB_XREF= gi:37533015
TID=OsAffx.14524.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0015I18.18), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g191503/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19110OsAffx.18297.1.S1_at11/1110+9396632..9398816Cytochrome P450, putative
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14524.1.S1_at--38--2851Chr10:9423684..9423708 (25 bp)
AAGTCTCAAGTACTCTCCGATTTCG
LOC_Os10g19150
OsAffx.14524.1.S1_at--625--6531Chr10:9423702..9423726 (25 bp)
GATTTCGTTGCCAACTGGACTGTTG
LOC_Os10g19150
OsAffx.14524.1.S1_at--765--5871Chr10:9423759..9423783 (25 bp)
GAGCGATCAACAATGGCCTTCAATG
LOC_Os10g19150
OsAffx.14524.1.S1_at--1078--9871Chr10:9424002..9424026 (25 bp)
TACATATGTTTCAACCCCGAGTCAT
NONE
OsAffx.14524.1.S1_at--72--6851Chr10:9424064..9424088 (25 bp)
GTTTGACGGTTTCGAAGTGCGCCAT
NONE
OsAffx.14524.1.S1_at--908--4331Chr10:9424085..9424109 (25 bp)
CCATGTCCATCGCAAGCACAATGTT
NONE
OsAffx.14524.1.S1_at--573--5791Chr10:9424129..9424153 (25 bp)
GACGCACTTCCAGACAAGAACCGGT
NONE
OsAffx.14524.1.S1_at--1109--5431Chr10:9424146..9424170 (25 bp)
GAACCGGTGGAACTGGTCACGTTCT
NONE
OsAffx.14524.1.S1_at--445--7911Chr10:9424176..9424200 (25 bp)
GGATTAATCAAACCTTCCGTCAAGG
NONE
OsAffx.14524.1.S1_at--281--3171Chr10:9424294..9424318 (25 bp)
AATTGCGCAAGATTGGTGTTCACCA
NONE
OsAffx.14524.1.S1_at--585--7751Chr10:9424308..9424332 (25 bp)
GGTGTTCACCACTTACAGATTTTCT
NONE
Target Sequence 
AAGTCTCAAGTACTCTCCGATTTCGTTGCCAACTGGACTGTTGCCGAGGACGGCAAAGTTGGGCATACGAACAACGAGCG
ATCAACAATGGCCTTCAATGGAGCATTCAGCATCCAAGGAGCAGGCGTTGGATTTATCCTTACATCTCTAAAAGGAGATC
ACAAACGACTCATTCTGAAAGGGGATTCAGAATTAGTTGGCAACCATGTGCATAAGGACTACATATGTTTCAACCCCGAG
TCATCCAAATACCTTGTAGAAGTCAGAAAGTTGGAGCAAAGGTTTGACGGTTTCGAAGTGCGCCATGTCCATCGCAAGCA
CAATGTTGATGCCAACAACCTTGCCCGACGCACTTCCAGACAAGAACCGGTGGAACTGGTCACGTTCTTTGAAGGATTAA
TCAAACCTTCCGTCAAGGGTACTCCAAAACACAACACTGACAACATCACCGATGTAGGCTCGGGCCTCGGGGGCTACAGT
GCAAGTCAAACAGTATCGTGGCGGACATTGAAATTGCGCAAGATTGGTGTTCACCACTTACAGATTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis