Browse Element(s) Details


OsAffx.18297.1.S1_at

Description gb:NM_195824.1
DB_XREF= gi:37533007
TID=OsAffx.18297.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1911011/11Cytochrome P450, putative
LOC_Os12g188201/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19064OsAffx.8272.1.S1_at11/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19064OsAffx.8980.1.S1_at1/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19080Os.2987.3.S1_x_at6/1110+9385243..9387918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19090OsAffx.6700.1.S1_at11/1110+9392508..9392864hypothetical protein
LOC_Os10g19100OsAffx.18296.1.S1_at10/1110+9393041..9395481hypothetical protein
LOC_Os10g19110OsAffx.18297.1.S1_at11/1110+9396632..9398816Cytochrome P450, putative
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18297.1.S1_at--450--8611Chr10:9396708..9396732 (25 bp)
TGGTGCATCGTCATAGCGGCAGTCG
LOC_Os10g19110
OsAffx.18297.1.S1_at--256--9391Chr10:9396715..9396739 (25 bp)
TCGTCATAGCGGCAGTCGTCAGTAT
LOC_Os10g19110
OsAffx.18297.1.S1_at--1152--271Chr10:9396720..9396744 (25 bp)
ATAGCGGCAGTCGTCAGTATGGAGA
LOC_Os10g19110
OsAffx.18297.1.S1_at--1060--6151Chr10:9398392..9398413 (22 bp)
GAGGATGATATTCAGCGTTACAGCC
LOC_Os10g19110
OsAffx.18297.1.S1_at--199--2191Chr10:9398464..9398488 (25 bp)
ACACTACGATGCTTTCGCTCAGGGC
LOC_Os10g19110
OsAffx.18297.1.S1_at--227--6331Chr10:9398471..9398495 (25 bp)
GATGCTTTCGCTCAGGGCCTTATAA
LOC_Os10g19110
OsAffx.18297.1.S1_at--275--10631Chr10:9398477..9398501 (25 bp)
TTCGCTCAGGGCCTTATAACACTTC
LOC_Os10g19110
OsAffx.18297.1.S1_at--1093--1051Chr10:9398484..9398508 (25 bp)
AGGGCCTTATAACACTTCCACTATG
LOC_Os10g19110
OsAffx.18297.1.S1_at--145--4451Chr10:9398487..9398511 (25 bp)
GCCTTATAACACTTCCACTATGCAT
LOC_Os10g19110
OsAffx.18297.1.S1_at--887--10171Chr10:9398491..9398515 (25 bp)
TATAACACTTCCACTATGCATTCCT
LOC_Os10g19110
OsAffx.18297.1.S1_at--1101--2132Chr10:9398495..9398519 (25 bp)
ACACTTCCACTATGCATTCCTGGCA
LOC_Os10g19110
Target Sequence 
TGGTGCATCGTCATAGCGGCAGTCGTCAGTATGGAGAGGCGGAGAGTGAGAGGATGATATTCAGCGTTACAGCCAAGAAG
TTAATCAGCTATGATTCTTCCACCTCCGACGGAAAGATGTGGAAACACTACGATGCTTTCGCTCAGGGCCTTATAACACT
TCCACTATGCATTCCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis